YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997000, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997000, gi|....

Description	E-value	Query Range	Subject Range
LEUD_PASMU - 3-isopropylmalate dehydratase small subunit OS=Pasteurella multocida GN=leuD PE=3 SV=1 LEUD_PASMU - 3-isopropylmalate dehydratase small subunit OS=Pasteurella multocida (strain Pm70) GN=leuD PE=3 SV=1	214.0	[0..2]	[165..6]
gi\|58580560, gi\|... - gi\|58580560\|ref\|YP_199576.1\| isopropylmalate isomerase small subunit [Xanthomonas oryzae pv. oryzae ...	213.0	[0..3]	[165..46]
LEUD_XANOR - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae GN=leuD PE=3 SV=2 LEUD_XANOM - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN... LEUD_XANOR - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO... LEUD_XANOP - 3-isopropylmalate dehydratase small subunit OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=leuD...	211.0	[0..3]	[165..6]
LEUD_HAEIN - 3-isopropylmalate dehydratase small subunit OS=Haemophilus influenzae GN=leuD PE=3 SV=1 LEUD_HAEIN - 3-isopropylmalate dehydratase small subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121...	211.0	[0..2]	[165..5]
LEUD_PSYWF - 3-isopropylmalate dehydratase small subunit OS=Psychrobacter sp. (strain PRwf-1) GN=leuD PE=3 SV=1	209.0	[0..2]	[165..5]
gi\|67155219, gi\|... - gi\|67155219\|ref\|ZP_00416847.1\| 3-isopropylmalate dehydratase small subunit [Azotobacter vinelandii A... LEUD_AZOVI - 3-isopropylmalate dehydratase small subunit OS=Azotobacter vinelandii GN=leuD PE=3 SV=1	209.0	[0..3]	[165..6]
LEUD_PSEAB - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=leuD PE...	209.0	[0..5]	[165..8]
gi\|168243477, gi... - gi\|205337440\|gb\|EDZ24204.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=1 SV=1 gi\|205331577, gi... - gi\|205331577\|gb\|EDZ18341.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATC... gi\|197240220, gi... - gi\|197261965\|ref\|ZP_03162039.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... gi\|197212139, gi... - gi\|197248436\|ref\|YP_002145096.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica s... gi\|194408815, gi... - gi\|194450511\|ref\|YP_002044080.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp.... gi\|205342455, gi... - gi\|205342455\|gb\|EDZ29219.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LED1_SALTY, LEUD... - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=3 SV=1, (P04787)... gi\|204927076, gi... - gi\|204927076\|ref\|ZP_03218278.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=leuD] [protein=isopropylmalate isomerase small subunit] [protein_id=YP_005235764.1] [location=...	209.0	[0..3]	[165..7]
LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum (strain GMI1000) GN=leuD PE=3 ... LEUD_RALSO - 3-isopropylmalate dehydratase small subunit OS=Ralstonia solanacearum GN=leuD PE=3 SV=1	209.0	[0..1]	[165..1]
LEUD_PSEAE - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa GN=leuD PE=3 SV=1 LEUD_PSEA8 - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain LESB58) GN=leuD PE=3 S... LEUD_PSEAE - 3-isopropylmalate dehydratase small subunit OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C... gi\|194552800, gi... - gi\|84326203\|ref\|ZP_00974232.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Pseudomonas aer... gi\|84320119, gi\|... - gi\|84320119\|ref\|ZP_00968504.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Pseudomonas aer... gi\|107102669 - gi\|107102669\|ref\|ZP_01366587.1\| hypothetical protein PaerPA_01003734 [Pseudomonas aeruginosa PACS2]	209.0	[0..5]	[165..8]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFGGPVLF LDRSDINTDE IIPAKYLTEI TKEDLKPYIL EDLKLPGFDP KGEKTKTARV  60
   61 VVSRANFGCG SSREHAPWVF EVNGITAVIA ESFARIFRQN MFNCGMAAIE LSADTIEGLF 120
  121 TYAGCADAAI SIDVAGQTLT ISGGGTSETH SFDISPFDKA LVLAGGWVDY ADSKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2hcuA
Description:	No description for 2hcuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits