YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996855, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996855, gi|....

Description	E-value	Query Range	Subject Range
gi\|48846415, gi\|... - gi\|78223049\|ref\|YP_384796.1\| dihydroorotate oxidase B, electron transfer subunit [Geobacter metallir...	217.0	[0..1]	[271..1]
gi\|146397706, gi... - gi\|88935472\|ref\|ZP_01141103.1\| dihydroorotate dehydrogenase, electron transfer subunit, putative [Ge...	213.0	[0..1]	[270..1]
gi\|221565156, gi... - gi\|222055867\|ref\|YP_002538229.1\| oxidoreductase FAD/NAD(P)-binding domain protein [Geobacter sp. FRC...	205.0	[0..1]	[270..1]
gi\|77918899, gi\|... - gi\|77918899\|ref\|YP_356714.1\| 2-polyprenylphenol hydroxylase/ flavodoxin oxidoreductase [Pelobacter c...	199.0	[0..3]	[270..4]
gi\|118581042, gi... - gi\|71838205\|ref\|ZP_00677966.1\| Oxidoreductase FAD/NAD(P)-binding [Pelobacter propionicus DSM 2379], ...	196.0	[0..1]	[270..1]
gi\|125713690, gi... - gi\|67876357\|ref\|ZP_00505244.1\| Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [...	193.0	[0..6]	[268..8]
gi\|629407 - pir\|\|S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus furiosus HYD1G_PYRFU - Sulfhydrogenase 1 subunit gamma OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc...	190.0	[0..3]	[265..18]
gi\|87289061, gi\|... - gi\|87307979\|ref\|ZP_01090121.1\| dihydroorotate dehydrogenase electron transfer subunit [Blastopirellu...	189.0	[0..1]	[270..18]
gi\|67980693, gi\|... - gi\|95931326\|ref\|ZP_01314041.1\| oxidoreductase FAD/NAD(P)-binding [Desulfuromonas acetoxidans DSM 684...	189.0	[0..7]	[270..8]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFKAMIISN HEVSPGYFRM RMSAPPELAD ARPGQFIMVR VRDAIDPLLR RPFGIFDVGT  60
   61 VASEFSGCGP QTYVEMLYKV VGKGTETLST YHHGDHVDLL APLGTGFDLG DPDEEKILVG 120
  121 GGIGIAPLYY LAKKLVERSR VRFFLGGRTR DDILCVTEFE RLGVETYVAT DDGTLGDRGF 180
  181 VTDVMERHIR GAAGKRTIYA CGPMPMLQAV AGIAERTGVP CQVSLEAYMA CGMGACLGCV 240
  241 VKGKEHSDES PDYRCVCKDG PVFAFDQLKW V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.154902
Match:	1ep3B
Description:	Dihydroorotate dehydrogenase B, PyrK subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.82418089257266	bayes_pls_golite062009
oxidoreductase activity	1.06930052685144	bayes_pls_golite062009
dihydroorotate dehydrogenase activity	0.67910028759775	bayes_pls_golite062009
transferase activity	0.20565726169867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: