YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983450, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983450, gi|....

Description	E-value	Query Range	Subject Range
gi\|110602061, gi... - gi\|222055756\|ref\|YP_002538118.1\| thiamine pyrophosphate protein domain protein TPP-binding [Geobacte...	249.0	[0..1]	[269..1]
gi\|88914985, gi\|... - gi\|88938272\|ref\|ZP_01143748.1\| keto/oxoacid ferredoxin oxidoreductase, beta subunit [Geobacter urani...	246.0	[0..1]	[269..1]
gi\|78193830, gi\|... - gi\|78222575\|ref\|YP_384322.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter metall...	242.0	[0..1]	[270..1]
gi\|5457940, gi\|1... - gi\|5457940\|emb\|CAB49430.1\| korB-2 2-ketoglutarate ferredoxin oxidoreductase, subunit beta [Pyrococcu... gi\|5457940, gi\|7... - pir\|\|G75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-2) PAB0347 - Pyrococcus aby...	232.0	[0..5]	[270..10]
KORB_METJA - 2-oxoglutarate synthase subunit korB OS=Methanocaldococcus jannaschii GN=korB PE=4 SV=1 KORB_METJA - 2-oxoglutarate synthase subunit KorB OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 ...	232.0	[0..1]	[271..1]
gi\|71740191, gi\|... - gi\|71839376\|ref\|ZP_00679126.1\| 2-oxoglutarate synthase [Pelobacter propionicus DSM 2379], gi\|7174019...	232.0	[0..1]	[269..1]
gi\|14591430, gi\|... - gi\|3258090\|dbj\|BAA30773.1\| 281aa long hypothetical ferredoxin oxidoreductase beta subunit [Pyrococcu... gi\|7431591 - pir\|\|E71046 probable ferredoxin oxidoreductase beta subunit - Pyrococcus horikoshii	232.0	[0..5]	[270..10]
gi\|18893947, gi\|... - gi\|18978144\|ref\|NP_579501.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Pyrococcus furio...	231.0	[0..5]	[270..10]
gi\|77918634, gi\|... - gi\|77918634\|ref\|YP_356449.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Pelobacter carbi...	231.0	[0..1]	[271..1]
gi\|20516345, gi\|... - gi\|20807788\|ref\|NP_622959.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Thermoanaerobact... gi\|20807788 - gi\|20807788\|ref\|NP_622959.1\| ferrodoxin oxidoreductase beta subunit [Thermoanaerobacter tengcongensi... gi\|254478665, gi... - gi\|254478665\|ref\|ZP_05092036.1\| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein...	230.0	[0..6]	[269..7]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNYEKYIR PGKLPHIWCP GCGHGIVMKG LIRAMDTLGL EKNNTAIVSG IGCASRLPGY  60
   61 MDCCTLHTAH GRAAAFATGV KLSKPEMTVF CVGGDGDGVA IGGNHFIHAC RRNIDMTYIL 120
  121 MNNKIYGMTG GQFSPATPHM AKASTTPYGN PDPSFDIAKL AIGAGATFVA RGTAFHANQI 180
  181 DKLIVEAVQH KGMSVVEILD DCPTCFGRRN KYRSVVEMMN HLKEVAVPVK AAEKMTPEQL 240
  241 QGKVLTGVLY KEDKPEYCEE YRKVIERAQG GAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1ni4A
Description:	E1-beta subunit of pyruvate dehydrogenase (PP module)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: