YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996521, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996521, gi|....

Description	E-value	Query Range	Subject Range
gi\|78043160, gi\|... - gi\|78043160\|ref\|YP_360803.1\| hemolysin A [Carboxydothermus hydrogenoformans Z-2901], gi\|77995275\|gb\|...	223.0	[0..1]	[218..26]
gi\|219539766, gi... - gi\|219669506\|ref\|YP_002459941.1\| hemolysin A [Desulfitobacterium hafniense DCB-2], gi\|219539766\|gb\|A...	223.0	[0..1]	[224..29]
gi\|83590353, gi\|... - gi\|83590353\|ref\|YP_430362.1\| hemolysin A [Moorella thermoacetica ATCC 39073], gi\|83573267\|gb\|ABC1981...	223.0	[0..1]	[215..27]
gi\|68170267, gi\|... - gi\|68205777\|ref\|ZP_00557975.1\| Hemolysin A [Desulfitobacterium hafniense DCB-2], gi\|68170267\|gb\|EAM9... gi\|89334541, gi\|... - gi\|89895093\|ref\|YP_518580.1\| hypothetical protein DSY2347 [Desulfitobacterium hafniense Y51], gi\|893...	222.0	[0..1]	[224..34]
gi\|196198081, gi... - gi\|196252472\|ref\|ZP_03151129.1\| hemolysin A [Clostridium thermocellum DSM 4150], gi\|196198081\|gb\|EDX... gi\|67875988, gi\|... - gi\|67875988\|ref\|ZP_00505046.1\| Hemolysin A [Clostridium thermocellum ATCC 27405], gi\|67850312\|gb\|EAM...	222.0	[0..1]	[226..27]
gi\|106885573, gi... - gi\|160880642\|ref\|YP_001559610.1\| hemolysin A [Clostridium phytofermentans ISDg], gi\|160429308\|gb\|ABX...	219.0	[0..1]	[223..26]
gi\|149950134, gi... - gi\|77683709\|ref\|ZP_00799154.1\| Hemolysin A [Alkaliphilus metalliredigenes QYMF], gi\|77640497\|gb\|EAO8...	219.0	[0..1]	[226..28]
gi\|7447267 - pir\|\|A72238 hemolysin - Thermotoga maritima (strain MSB8) gi\|170289028, gi... - gi\|170289028\|ref\|YP_001739266.1\| hemolysin A [Thermotoga sp. RQ2], gi\|170176531\|gb\|ACB09583.1\| hemol... gi\|224398550, gi... - gi\|254485079\|ref\|ZP_05098294.1\| hemolysin [Marinitoga piezophila KA3], gi\|224398550\|ref\|YP_002614181... gi\|15644324, gi\|... - gi\|4982145\|gb\|AAD36643.1\|AE001802_12 hemolysin [Thermotoga maritima MSB8], gi\|15644324\|ref\|NP_229376... gi\|119827529, gi... - gi\|148270346\|ref\|YP_001244806.1\| hemolysin A [Thermotoga petrophila RKU-1], gi\|147735890\|gb\|ABQ47230...	219.0	[0..1]	[227..28]
gi\|46135201, gi\|... - gi\|75910708\|ref\|YP_325004.1\| hemolysin A [Anabaena variabilis ATCC 29413], gi\|75704433\|gb\|ABA24109.1...	218.0	[0..2]	[225..28]
gi\|116094994, gi... - gi\|23003799\|ref\|ZP_00047444.1\| hypothetical protein Lgas_03001821 [Lactobacillus gasseri ATCC 33323]... gi\|23003799 - gi\|23003799\|ref\|ZP_00047444.1\| COG1189: Predicted rRNA methylase [Lactobacillus gasseri] gi\|226820802 - gi\|226820802\|ref\|ZP_03809921.1\| rRNA methylase [Lactobacillus gasseri MV-22]	218.0	[0..1]	[218..27]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQVVVNDH LADKAGLQVP VEAEIRLKGE DIPFVSRGGL KLARALEEFG IDVADMTAID  60
   61 VGASTGGFTD CLLQRGARKV YAVDVGYGQL AWKLRQDSRV VNLEKTNIRY LEPGALPETP 120
  121 GLAVIDASFI SLDKVLPSTL RLIGEEGVIV ALIKPQFEVG RGEVGKGGVV RDEEKHRRVI 180
  181 ADVVALAEGL GLMVLGVTES PILGPKGNRE FLIHLKKAVG ETPPHNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1i9gA
Description:	Probable methyltransferase Rv2118c
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.857347609112816	bayes_pls_golite062009
transferase activity	0.769739415230943	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.648175251543522	bayes_pls_golite062009
methyltransferase activity	0.646052703874729	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.00827854656426392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: