YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983295, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983295, gi|....

Description	E-value	Query Range	Subject Range
tr\|Q87WR5\|Q87WR5... - 4-carboxymuconolactone decarboxylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pcaC-2 PE... gi\|213928486, gi... - gi\|213966636\|ref\|ZP_03394787.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. tomat... gi\|28854865, gi\|... - gi\|28871613\|ref\|NP_794232.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. tomato s...	104.0	[0..9]	[105..22]
gi\|71735860, gi\|... - gi\|71735860\|ref\|YP_276300.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. phaseoli...	102.0	[0..8]	[105..21]
gi\|23470967, gi\|... - gi\|66047396\|ref\|YP_237237.1\| carboxymuconolactone decarboxylase [Pseudomonas syringae pv. syringae B...	102.0	[0..9]	[105..22]
DC4C_ACIAD - 4-carboxymuconolactone decarboxylase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=p...	102.0	[0..8]	[110..22]
gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], r... gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], g...	101.0	[0..7]	[110..21]
gi\|5091484 - gi\|5091484\|gb\|AAD39557.1\| PcaC-like protein [Pseudomonas putida] tr\|I7BPT6\|I7BPT6... - PcaC-like protein OS=Pseudomonas putida (strain DOT-T1E) GN=pcaC PE=4 SV=1	101.0	[0..7]	[110..21]
gi\|95109365 - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ... gi\|104780378, gi... - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ...	101.0	[0..7]	[110..21]
gi\|24982843, gi\|... - gi\|26988115\|ref\|NP_743540.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida KT2440], gi\|24... tr\|E4RHI8\|E4RHI8... - PcaC OS=Pseudomonas putida (strain BIRD-1) GN=pcaC PE=4 SV=1	101.0	[0..7]	[110..21]
gi\|48732459, gi\|... - gi\|77457059\|ref\|YP_346564.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas fluorescens Pf0-1], g...	100.0	[0..1]	[105..1]
gi\|148513605, gi... - gi\|82738524\|ref\|ZP_00901355.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida F1], gi\|8271...	100.0	[0..7]	[110..21]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYYVPDDL AKFGDIGKDA PDLAKKFFDY YGAVFAEGEL TEREKTLIAL AVAHAVQCPY  60
   61 CIDAYTRACL EKGSNLGEMT EAVHVANAIR GGAALVHGVQ MRKIAEKLSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.154902
Match:	2o4dA
Description:	No description for 2o4dA was found.

Predicted functions:

Term	Confidence	Notes
4-carboxymuconolactone decarboxylase activity	2.79801226397748	bayes_pls_golite062009
catalytic activity	1.59852263091408	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: