YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983262, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983262, gi|....

Description	E-value	Query Range	Subject Range
gi\|78194898, gi\|... - gi\|78223643\|ref\|YP_385390.1\| cobalt ABC transporter CbiQ, permease subunit [Geobacter metallireducen...	161.0	[0..1]	[270..1]
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	159.0	[0..8]	[255..1]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	157.0	[0..8]	[257..1]
gi\|68194964, gi\|... - gi\|69247199\|ref\|ZP_00604261.1\| Cobalt transport protein [Enterococcus faecium DO], gi\|68194964\|gb\|EA... gi\|48824751 - ref\|ZP_00286090.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ and related tr...	157.0	[0..8]	[255..1]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	152.0	[0..9]	[255..1]
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	152.0	[0..9]	[255..1]
gi\|218901346, gi... - gi\|218901346\|ref\|YP_002449180.1\| cobalt transport protein [Bacillus cereus AH820], gi\|218535401\|gb\|A... gi\|30260332, gi\|... - gi\|30260332\|ref\|NP_842709.1\| cobalt transport protein [Bacillus anthracis str. Ames], gi\|30253653\|gb... gi\|47525397, gi\|... - gi\|47525397\|ref\|YP_016746.1\| cobalt transport protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|21398099 - ref\|NP_654084.1\| CbiQ, Cobalt transport protein [Bacillus anthracis str. A2012] gi\|225788254, gi... - gi\|225862193\|ref\|YP_002747571.1\| cobalt transport protein [Bacillus cereus 03BB102], gi\|225788254\|gb... gi\|118415134, gi... - gi\|118475909\|ref\|YP_893060.1\| cobalt ABC transporter, permease component [Bacillus thuringiensis str... gi\|227002880, gi... - gi\|227812814\|ref\|YP_002812823.1\| cobalt transport protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|254726280 - gi\|254726280\|ref\|ZP_05188062.1\| cobalt transport protein [Bacillus anthracis str. A1055] gi\|254735285 - gi\|254735285\|ref\|ZP_05192993.1\| cobalt transport protein [Bacillus anthracis str. Western North Amer... gi\|229603881, gi... - gi\|229603881\|ref\|YP_002864792.1\| cobalt transport protein [Bacillus anthracis str. A0248], gi\|229268... gi\|254686640 - gi\|254686640\|ref\|ZP_05150499.1\| cobalt transport protein [Bacillus anthracis str. CNEVA-9066] gi\|52145078, gi\|... - gi\|52145078\|ref\|YP_081751.1\| cobalt ABC transporter permease [Bacillus cereus E33L], gi\|51978547\|gb\|... gi\|254756840 - gi\|254756840\|ref\|ZP_05208868.1\| cobalt transport protein [Bacillus anthracis str. Australia 94] gi\|49183175, gi\|... - gi\|49183175\|ref\|YP_026427.1\| cobalt transport protein [Bacillus anthracis str. Sterne], gi\|49177102\|... gi\|254739477 - gi\|254739477\|ref\|ZP_05197175.1\| cobalt transport protein [Bacillus anthracis str. Kruger B] gi\|49481686, gi\|... - gi\|49481686\|ref\|YP_034492.1\| cobalt ABC transporter permease [Bacillus thuringiensis serovar konkuki... gi\|254755531 - gi\|254755531\|ref\|ZP_05207565.1\| cobalt transport protein [Bacillus anthracis str. Vollum] gi\|196041150, gi... - gi\|196041150\|ref\|ZP_03108446.1\| cobalt transport protein [Bacillus cereus NVH0597-99], gi\|196028085\|... gi\|196022927, gi... - gi\|196046182\|ref\|ZP_03113409.1\| cobalt transport protein [Bacillus cereus 03BB108], gi\|196022927\|gb\|... gi\|190567400, gi... - gi\|190567400\|ref\|ZP_03020314.1\| cobalt transport protein [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|196036006, gi... - gi\|196036006\|ref\|ZP_03103407.1\| cobalt transport protein [Bacillus cereus W], gi\|195991375\|gb\|EDX553... gi\|170125624, gi... - gi\|170709468\|ref\|ZP_02899871.1\| cobalt transport protein [Bacillus anthracis str. A0389], gi\|1701256... gi\|172079842, gi... - gi\|177656194\|ref\|ZP_02937175.1\| cobalt transport protein [Bacillus anthracis str. A0174], gi\|1720798... gi\|167642073, gi... - gi\|167642073\|ref\|ZP_02400297.1\| cobalt transport protein [Bacillus anthracis str. A0193], gi\|1675099... gi\|170689679, gi... - gi\|170689679\|ref\|ZP_02880857.1\| cobalt transport protein [Bacillus anthracis str. A0465], gi\|1706663... gi\|164710914, gi... - gi\|165873346\|ref\|ZP_02217947.1\| cobalt transport protein [Bacillus anthracis str. A0488], gi\|1647109...	151.0	[0..9]	[255..1]
ECFT_LACC3 - Energy-coupling factor transporter transmembrane protein EcfT OS=Lactobacillus casei (strain ATCC 33... gi\|227188367, gi... - gi\|227533990\|ref\|ZP_03964039.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|191639398, gi... - gi\|191639398\|ref\|YP_001988564.1\| Cobalt transport permease protein [Lactobacillus casei BL23], gi\|19... gi\|224455627, gi... - gi\|239630321\|ref\|ZP_04673352.1\| cobalt transport protein [Lactobacillus paracasei subsp. paracasei 8...	151.0	[0..9]	[242..1]
gi\|47570253, gi\|... - gi\|47570253\|ref\|ZP_00240904.1\| cobalt transport family protein [Bacillus cereus G9241], gi\|47553077\|...	151.0	[0..9]	[254..1]
gi\|169347090, gi... - gi\|169347090\|ref\|ZP_02866032.1\| cobalt ABC transporter, permease protein [Clostridium perfringens C ... gi\|182381146, gi... - gi\|182381146\|gb\|EDT78625.1\| cobalt ABC transporter, permease protein [Clostridium perfringens NCTC 8... gi\|168211872, gi... - gi\|170710154\|gb\|EDT22336.1\| cobalt ABC transporter, permease protein [Clostridium perfringens B str.... gi\|18311354, gi\|... - gi\|18311354\|ref\|NP_563288.1\| hypothetical protein CPE2372 [Clostridium perfringens str. 13], gi\|1814... gi\|110674822, gi... - gi\|110800175\|ref\|YP_697061.1\| cobalt ABC transporter, permease protein [Clostridium perfringens ATCC...	151.0	[0..7]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIESALRE LNRLDLLAGG NSAVHRLDPR AKVFVTFAFI VAVVSLGRYE LAALVPFAVF  60
   61 PVALAASAGL PATVILRKLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLPFAVVVG LFNPLLDRQP LLALGPLVIS GGWISFLSII VRSLLTVGAA VVLVAVTGFS  60
   61 GICMALERFG VPRPFVVQLL FLYRYLFVLA DEGGRMVRAR ELRTFSGRGR GLKAYSALVG 120
  121 SLLLRTWDRA ERIHMAMLSR GFNGQFHVRR EIRPGRADWI FTAGWCALFV LFRLVNIPHL 180
  181 LGGLVTGGYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.865	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.844	N/A	N/A	a.7.7	BAG domain
View	Download	0.808	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.784	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.775	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits