YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983183, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983183, gi|....

Description	E-value	Query Range	Subject Range
gi\|46156715 - gi\|46156715\|ref\|ZP_00132245.2\| COG0782: Transcription elongation factor [Haemophilus somnus 2336]	205.0	[0..4]	[158..12]
gi\|109456692, gi... - gi\|110680576\|ref\|YP_683583.1\| transcription elongation factor GreA [Roseobacter denitrificans OCh 11...	203.0	[0..4]	[157..158]
gi\|23467072, gi\|... - gi\|23467072\|ref\|ZP_00122657.1\| COG0782: Transcription elongation factor [Haemophilus somnus 129PT], ... gi\|170717727, gi... - gi\|170717727\|ref\|YP_001784798.1\| transcription elongation factor GreA [Haemophilus somnus 2336], gi\|...	201.0	[0..4]	[158..2]
GREA_RHORT - Transcription elongation factor GreA OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	199.0	[0..4]	[157..2]
GREA_HAEIN - Transcription elongation factor GreA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20... GREA_HAEIN - Transcription elongation factor greA OS=Haemophilus influenzae GN=greA PE=3 SV=1	197.0	[0..4]	[157..2]
gi\|56179097, gi\|... - gi\|56460087\|ref\|YP_155368.1\| transcription elongation factor GreA [Idiomarina loihiensis L2TR], gi\|5...	197.0	[0..4]	[158..2]
gi\|229809632, gi... - gi\|229847491\|ref\|ZP_04467588.1\| transcription elongation factor GreA [Haemophilus influenzae 7P49H1]... gi\|144983658 - gi\|144983658\|gb\|EDJ91118.1\| transcription elongation factor GreA [Haemophilus influenzae R3021] gi\|42631768 - gi\|42631768\|ref\|ZP_00157306.1\| COG0782: Transcription elongation factor [Haemophilus influenzae R286... gi\|148718211, gi... - gi\|148826969\|ref\|YP_001291722.1\| transcription elongation factor GreA [Haemophilus influenzae PittGG... gi\|148826011, gi... - gi\|148826011\|ref\|YP_001290764.1\| transcription elongation factor GreA [Haemophilus influenzae PittEE... gi\|145271883, gi... - gi\|145638911\|ref\|ZP_01794519.1\| transcription elongation factor GreA [Haemophilus influenzae PittII]... gi\|42629493 - gi\|42629493\|ref\|ZP_00155039.1\| COG0782: Transcription elongation factor [Haemophilus influenzae R284... gi\|145270704, gi... - gi\|145636182\|ref\|ZP_01791852.1\| transcription elongation factor GreA [Haemophilus influenzae PittHH]... gi\|145634950, gi... - gi\|145634950\|ref\|ZP_01790657.1\| transcription elongation factor GreA [Haemophilus influenzae PittAA]... gi\|145630776 - gi\|145630776\|ref\|ZP_01786554.1\| transcription elongation factor GreA [Haemophilus influenzae 22.4-21... gi\|144978260, gi... - gi\|145629417\|ref\|ZP_01785215.1\| transcription elongation factor GreA [Haemophilus influenzae 22.1-21... gi\|68058200, gi\|... - gi\|68250001\|ref\|YP_249113.1\| transcription elongation factor GreA [Haemophilus influenzae 86-028NP],...	197.0	[0..4]	[157..2]
Q66F69\|Q66F69_YERPS - Transcription elongation factor - Yersinia pseudotuberculosis gi\|229695524, gi... - gi\|229839158\|ref\|ZP_04459317.1\| transcription elongation factor [Yersinia pestis biovar Orientalis s... gi\|229896647, gi... - gi\|229896647\|ref\|ZP_04511814.1\| transcription elongation factor [Yersinia pestis Pestoides A], gi\|22... gi\|229687214, gi... - gi\|229899722\|ref\|ZP_04514863.1\| transcription elongation factor [Yersinia pestis biovar Orientalis s... gi\|218930519, gi... - gi\|218930519\|ref\|YP_002348394.1\| transcription elongation factor GreA [Yersinia pestis CO92], gi\|161... gi\|51594823, gi\|... - gi\|51594823\|ref\|YP_069014.1\| transcription elongation factor GreA [Yersinia pseudotuberculosis IP 32... GREA_YERPG - Transcription elongation factor GreA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=greA PE=3 SV=... gi\|153947048, gi... - gi\|77631468\|ref\|ZP_00794054.1\| COG0782: Transcription elongation factor [Yersinia pseudotuberculosis... GREA_YERPE - Transcription elongation factor GreA OS=Yersinia pestis GN=greA PE=3 SV=1 gi\|167057521, gi... - gi\|167423351\|ref\|ZP_02315104.1\| transcription elongation factor GreA [Yersinia pestis biovar Mediaev... gi\|166961268, gi... - gi\|167420462\|ref\|ZP_02312215.1\| transcription elongation factor GreA [Yersinia pestis biovar Orienta... gi\|170025954, gi... - gi\|170025954\|ref\|YP_001722459.1\| transcription elongation factor GreA [Yersinia pseudotuberculosis Y... gi\|167470193 - gi\|167470193\|ref\|ZP_02334897.1\| transcription elongation factor GreA [Yersinia pestis FV-1] gi\|186893832, gi... - gi\|186893832\|ref\|YP_001870944.1\| transcription elongation factor GreA [Yersinia pseudotuberculosis P... gi\|165914674, gi... - gi\|89104075\|ref\|ZP_01176629.1\| COG0782: Transcription elongation factor [Yersinia pestis biovar Orie... gi\|108777966, gi... - gi\|108806053\|ref\|YP_649969.1\| transcription elongation factor GreA [Yersinia pestis Antiqua], gi\|108... gi\|229679654, gi... - gi\|229903884\|ref\|ZP_04518997.1\| transcription elongation factor [Yersinia pestis Nepal516], gi\|22967... gi\|165989711, gi... - gi\|166011327\|ref\|ZP_02232225.1\| transcription elongation factor GreA [Yersinia pestis biovar Antiqua... gi\|165928150, gi... - gi\|165928150\|ref\|ZP_02223982.1\| transcription elongation factor GreA [Yersinia pestis biovar Orienta... gi\|45440432, gi\|... - gi\|45440432\|ref\|NP_991971.1\| transcription elongation factor GreA [Yersinia pestis biovar Microtus s... gi\|167049304, gi... - gi\|167401279\|ref\|ZP_02306779.1\| transcription elongation factor GreA [Yersinia pestis biovar Antiqua... gi\|21957396, gi\|... - gi\|22124593\|ref\|NP_668016.1\| transcription elongation factor GreA [Yersinia pestis KIM], gi\|21957396... gi\|166214002, gi... - gi\|166214002\|ref\|ZP_02240037.1\| transcription elongation factor GreA [Yersinia pestis biovar Antiqua... gi\|145600801, gi... - gi\|145600801\|ref\|YP_001164877.1\| transcription elongation factor GreA [Yersinia pestis Pestoides F],... gi\|153997282, gi... - gi\|153997282\|ref\|ZP_02022382.1\| transcription elongation factor [Yersinia pestis CA88-4125], gi\|1492...	197.0	[0..4]	[157..2]
gi\|36787795, gi\|... - gi\|37528357\|ref\|NP_931702.1\| transcription elongation factor GreA [Photorhabdus luminescens subsp. l...	197.0	[0..4]	[157..2]
gi\|167995305, gi... - gi\|205327000\|gb\|EDZ13764.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|205323254, gi... - gi\|205323254\|gb\|EDZ11093.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|161365670, gi... - gi\|161616306\|ref\|YP_001590271.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|205348488, gi... - gi\|205348488\|gb\|EDZ35119.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|205337869, gi... - gi\|205337869\|gb\|EDZ24633.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|168237998, gi... - gi\|197289064\|gb\|EDY28433.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|205333717, gi... - gi\|205333717\|gb\|EDZ20481.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=greA] [protein=transcription elongation factor GreA] [protein_id=YP_005239477.1] [location=com... gi\|238910092 - gi\|238910092\|ref\|ZP_04653929.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|204319945, gi... - gi\|204931178\|ref\|ZP_03221972.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|199605782, gi... - gi\|200388684\|ref\|ZP_03215296.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|197939489, gi... - gi\|198244973\|ref\|YP_002217271.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|197095635, gi... - gi\|197364158\|ref\|YP_002143795.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|213646994 - gi\|213646994\|ref\|ZP_03377047.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|213425423 - gi\|213425423\|ref\|ZP_03358173.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|206710350, gi... - gi\|207858547\|ref\|YP_002245198.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|205354200, gi... - gi\|205354200\|ref\|YP_002228001.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|194451049, gi... - gi\|194451049\|ref\|YP_002047327.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|194401107, gi... - gi\|194442444\|ref\|YP_002042555.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|168819635, gi... - gi\|205343382\|gb\|EDZ30146.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|168463479, gi... - gi\|195633532\|gb\|EDX51946.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteric... gi\|197262177, gi... - gi\|197262177\|ref\|ZP_03162251.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... gi\|197248717, gi... - gi\|197248717\|ref\|YP_002148223.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|194737942, gi... - gi\|194737942\|ref\|YP_002116247.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|194472290, gi... - gi\|194472290\|ref\|ZP_03078274.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... GREA_SALTY - Transcription elongation factor GreA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... GREA_SALTY - Transcription elongation factor greA OS=Salmonella typhimurium GN=greA PE=3 SV=1 gi\|29139185, gi\|... - gi\|29143550\|ref\|NP_806892.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteri... GREA_SALTI - Transcription elongation factor GreA OS=Salmonella typhi GN=greA PE=3 SV=1 gi\|16762061 - gi\|16762061\|ref\|NP_457678.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteri... gi\|224585094, gi... - gi\|224585094\|ref\|YP_002638893.1\| transcription elongation factor GreA [Salmonella enterica subsp. en... gi\|214000936 - gi\|214000936\|ref\|ZP_03411671.1\| transcription elongation factor GreA [Salmonella enterica subsp. ent... GREA_SALTY - Transcription elongation factor greA OS=Salmonella typhimurium GN=greA PE=3 SV=1 GREA_SALTI - Transcription elongation factor greA OS=Salmonella typhi GN=greA PE=3 SV=1 gi\|62181807, gi\|... - gi\|62181807\|ref\|YP_218224.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteri... gi\|56415228, gi\|... - gi\|56415228\|ref\|YP_152303.1\| transcription elongation factor GreA [Salmonella enterica subsp. enteri...	197.0	[0..4]	[157..2]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSNYITP EGAKKLRTEL TWLWKEERPR VTQGVADAAA EGDRSENAEY IYGKKRLREI  60
   61 DRRIRFLTQR LDALTVVDAP PPATDKVFFG AWVRLENEEG DEVVYRVVGP DETDAAKGHI 120
  121 SLDSPMGKSL LGRREGDEVH VRRPAGEAVF TVLEVGYQPL D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1grjA
Description:	GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits