YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982892, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982892, gi|....

Description	E-value	Query Range	Subject Range
CYC7_GEOMG - Cytochrome c7 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2902 PE=1 ...	120.0	[0..1]	[92..1]
gi\|39996859, gi\|... - gi\|39996859\|ref\|NP_952810.1\| cytochrome c3 [Geobacter sulfurreducens PCA], gi\|39983747\|gb\|AAR35137.1...	113.0	[0..1]	[90..1]
gi\|118581909, gi... - gi\|71836224\|ref\|ZP_00675993.1\| cytochrome c3 [Pelobacter propionicus DSM 2379], gi\|71743054\|gb\|EAO38...	105.0	[0..2]	[92..3]
gi\|78358749, gi\|... - gi\|78358749\|ref\|YP_390198.1\| acidic cytochrome c3 [Desulfovibrio desulfuricans subsp. desulfuricans ...	95.0	[0..1]	[91..2]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLIAAAAL TLFCAGLAVA HDKVVVLEAK NGNVTFDHKK HAGVKGECKA CHETEAGGKI  60
   61 AGMGKDWAHK TCTGCHKEMG KGPTKCGECH KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1os6A
Description:	Cytochrome c7 (PpcA) from Geobacter sulfurreducens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.572741711995569	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: