YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982881, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982881, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195005, gi\|... - gi\|78223750\|ref\|YP_385497.1\| OmpA/MotB [Geobacter metallireducens GS-15], gi\|78195005\|gb\|ABB32772.1\|...	210.0	[0..1]	[289..1]
gi\|109646100, gi... - gi\|68205538\|ref\|ZP_00557739.1\| OmpA/MotB domain [Desulfitobacterium hafniense DCB-2], gi\|68170501\|gb...	185.0	[0..26]	[287..3]
gi\|89335227, gi\|... - gi\|89895779\|ref\|YP_519266.1\| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51], gi\|893...	184.0	[0..26]	[287..3]
gi\|78043824, gi\|... - gi\|78043824\|ref\|YP_359811.1\| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901]...	183.0	[0..27]	[287..2]
gi\|89200339, gi\|... - gi\|89200339\|ref\|ZP_01179093.1\| OmpA/MotB [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89151658\|...	182.0	[0..33]	[285..14]
gi\|2853603 - gi\|2853603\|gb\|AAC08067.1\| MotB [Pseudomonas putida]	181.0	[0..27]	[286..2]
MOTB_BACSU - Motility protein B OS=Bacillus subtilis GN=motB PE=3 SV=1 gi\|221318482 - gi\|221318482\|ref\|ZP_03599776.1\| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str.... MOTB_BACSU - Motility protein B OS=Bacillus subtilis (strain 168) GN=motB PE=3 SV=1 gi\|221322755 - gi\|221322755\|ref\|ZP_03604049.1\| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str.... gi\|221313560 - gi\|221313560\|ref\|ZP_03595365.1\| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str....	181.0	[0..32]	[288..9]
gi\|148266090, gi... - gi\|88937978\|ref\|ZP_01143501.1\| chemotaxis MotB protein [Geobacter uraniumreducens Rf4], gi\|88915281\|...	181.0	[0..27]	[288..2]
gi\|15893597, gi\|... - gi\|15893597\|ref\|NP_346946.1\| chemotaxis motility protein B, gene motB [Clostridium acetobutylicum AT... gi\|25332313 - pir\|\|C96937 chemotaxis motility protein B, gene motB [imported] - Clostridium acetobutylicum	181.0	[0..28]	[287..2]
gi\|89084378, gi\|... - gi\|89100891\|ref\|ZP_01173740.1\| flagellar motor protein [Bacillus sp. NRRL B-14911], gi\|89084378\|gb\|E...	180.0	[0..25]	[287..2]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRLVILAV LSLSSLMLSG CLVGEGKYLK KVEEADNLSK ELTTLQEKYS ALSSENEGLK  60
   61 GALAKLKDEA AGLAQDKEKL TADNRELQQV LQAKSDSLSQ NIVELRQKVS QLEAENARLK 120
  121 ADIASTQKAK EEQVREVSKT YEDLLDKMKG EIAQGQVTIS ELKGKLTVNM VDAILF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.17
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [177-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGKAEVKPA GMDLLQKVVE ILKDVKDKAI RIEGHTDNVQ IVGNLAKRFP TNWELSSARA  60
   61 INVTRFLQSR GIDPAVLSAV AYGEYHPVAP NDTDEGKAKN RRIEIILVPK DAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits