YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982666, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982666, gi|....

Description	E-value	Query Range	Subject Range
gi\|25356060 - pir\|\|F83937 acyl-CoA thioester hydrolase BH2302 [imported] - Bacillus halodurans (strain C-125) gi\|15614865, gi\|... - gi\|15614865\|ref\|NP_243168.1\| acyl-CoA thioester hydrolase [Bacillus halodurans C-125], gi\|10174922\|d...	153.0	[0..1]	[157..1]
gi\|110335861, gi... - gi\|121595165\|ref\|YP_987061.1\| thioesterase superfamily protein [Acidovorax sp. JS42], gi\|120607245\|g... gi\|222111506, gi... - gi\|222111506\|ref\|YP_002553770.1\| thioesterase superfamily protein [Diaphorobacter sp. TPSY], gi\|2217...	151.0	[0..5]	[156..1]
gi\|71848752, gi\|... - gi\|71909131\|ref\|YP_286718.1\| thioesterase superfamily protein [Dechloromonas aromatica RCB], gi\|7184...	150.0	[0..5]	[157..1]
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	149.0	[0..11]	[156..7]
gi\|7226722, gi\|1... - gi\|7226722\|gb\|AAF41838.1\| acyl CoA thioester hydrolase family protein [Neisseria meningitidis MC58],... gi\|11282840 - pir\|\|G81079 acyl CoA thioester hydrolase family protein NMB1482 [imported] - Neisseria meningitidis ...	149.0	[0..1]	[152..1]
gi\|254493504, gi... - gi\|254493504\|ref\|ZP_05106675.1\| acyl-CoA hydrolase [Neisseria gonorrhoeae 1291], gi\|226512544\|gb\|EEH... gi\|240127944 - gi\|240127944\|ref\|ZP_04740605.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-93-1035] gi\|193933584, gi... - gi\|194098294\|ref\|YP_002001352.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae NCCP11945], gi\|1... gi\|240014368 - gi\|240014368\|ref\|ZP_04721281.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae DGI18] gi\|239998714 - gi\|239998714\|ref\|ZP_04718638.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae 35/02] gi\|240115389 - gi\|240115389\|ref\|ZP_04729451.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID18] gi\|59718321, gi\|... - gi\|59801426\|ref\|YP_208138.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA 1090], gi\|5971832... gi\|240112644 - gi\|240112644\|ref\|ZP_04727134.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae MS11] gi\|240080998 - gi\|240080998\|ref\|ZP_04725541.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA19] gi\|240016801 - gi\|240016801\|ref\|ZP_04723341.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA6140] gi\|240125492 - gi\|240125492\|ref\|ZP_04738378.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-92-679] gi\|240123241 - gi\|240123241\|ref\|ZP_04736197.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID332] gi\|240121930 - gi\|240121930\|ref\|ZP_04734892.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID24-1] gi\|240117686 - gi\|240117686\|ref\|ZP_04731748.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID1]	148.0	[0..1]	[152..1]
gi\|11282841 - pir\|\|F81864 probable acyl-CoA hydrolase NMA1691 [imported] - Neisseria meningitidis (strain Z2491 se... gi\|218768474, gi... - gi\|7380332\|emb\|CAB84919.1\| putative acyl-CoA hydrolase [Neisseria meningitidis Z2491], gi\|218768474\|...	148.0	[0..1]	[155..1]
gi\|39575518, gi\|... - gi\|42523312\|ref\|NP_968692.1\| Acyl-CoA thioester hydrolase [Bdellovibrio bacteriovorus HD100], gi\|395...	147.0	[0..7]	[156..23]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	147.0	[0..5]	[156..1]
gi\|90022125, gi\|... - gi\|90022125\|ref\|YP_527952.1\| Acyl-CoA hydrolase-like [Saccharophagus degradans 2-40], gi\|89951725\|gb...	146.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHATETHHR EWTLIETLLP QDTNPAGSIF GGVIMGLMDK AAAIAAWRYT RREVVTAGAE  60
   61 HISLLRPVRL AEVVKVEARV VCTGRTSIDV DVVVETENVL TGESAVAATG FFTMVALDKE 120
  121 GKPTEVPRWE PRTEEERRLC EAARERRAQR VRTSEQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1vpmA
Description:	Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.215996736903871	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: