YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982521, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982521, gi|....

Description	E-value	Query Range	Subject Range
gi\|21647505, gi\|... - gi\|21674330\|ref\|NP_662395.1\| carbon-nitrogen hydrolase family protein [Chlorobium tepidum TLS], gi\|2...	261.0	[0..3]	[276..6]
gi\|67918649, gi\|... - gi\|67918649\|ref\|ZP_00512244.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	257.0	[0..2]	[276..5]
gi\|39996130, gi\|... - gi\|39996130\|ref\|NP_952081.1\| glycosy hydrolase family protein [Geobacter sulfurreducens PCA], gi\|399...	256.0	[0..2]	[276..3]
gi\|78221930, gi\|... - gi\|78221930\|ref\|YP_383677.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Geoba...	255.0	[0..2]	[276..3]
gi\|114320600, gi... - gi\|78700084\|ref\|ZP_00864541.1\| glycosyl hydrolase, family 10 [Alkalilimnicola ehrlichei MLHE-1], gi\|...	254.0	[0..3]	[276..4]
gi\|94968968, gi\|... - gi\|94968968\|ref\|YP_591016.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Candi...	253.0	[0..2]	[282..5]
gi\|67935681, gi\|... - gi\|67935681\|ref\|ZP_00528700.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	252.0	[0..2]	[276..70]
gi\|106890750, gi... - gi\|148656858\|ref\|YP_001277063.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [R...	249.0	[0..3]	[276..5]
gi\|110638899, gi... - gi\|110638899\|ref\|YP_679108.1\| carbon-nitrogen hydrolase [Cytophaga hutchinsonii ATCC 33406], gi\|1102... gi\|48856921 - gi\|48856921\|ref\|ZP_00311078.1\| COG0388: Predicted amidohydrolase [Cytophaga hutchinsonii]	249.0	[0..2]	[280..4]
gi\|77360775, gi\|... - gi\|77360775\|ref\|YP_340350.1\| Beta-ureidopropionase [Pseudoalteromonas haloplanktis TAC125], gi\|76875...	248.0	[0..2]	[275..6]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTVALAQI KPKLGCVADN CLMVRQAVER GIDEKADLVV FPELALTGYF LKDLVPDVAL  60
   61 RLDAPEINAL RELSRHISIA VGLVEVSADY RFFNTSLYLE GGEVRHVHRK VYLPTYGLFD 120
  121 EQRYLARGEH FRAFDSRFGR MGLLICEDMW HLSAPYILAM DGATTVICLS SSPGRGLTED 180
  181 DSLGSTIAWQ KLTSTTAMFF NCRVLYCNRV GYEDGVNFWG GSEVVAPSGA VTSRARILEE 240
  241 DFLVAGVDEG ALRRERIFSP MMRDESLLIT LSELRRIERE RGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.09691
Match:	1j31A
Description:	Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.33107499649316	bayes_pls_golite062009
hydrolase activity	0.303336127811897	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: