YRC Public Data Repository - Protein Structure Prediction

Protein:	DTD_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTD_GEOSL.

Description	E-value	Query Range	Subject Range
DTD_THEAQ - D-aminoacyl-tRNA deacylase OS=Thermus aquaticus GN=dtd PE=3 SV=2	251.0	[0..1]	[148..1]
DTD_GEOKA - D-aminoacyl-tRNA deacylase OS=Geobacillus kaustophilus (strain HTA426) GN=dtd PE=3 SV=1 DTD_GEOKA - D-tyrosyl-tRNA(Tyr) deacylase OS=Geobacillus kaustophilus GN=dtd PE=3 SV=1	250.0	[0..1]	[148..1]
DTD_BACCN - D-aminoacyl-tRNA deacylase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391...	248.0	[0..1]	[146..1]
gi\|47556625, gi\|... - gi\|47566595\|ref\|ZP_00237417.1\| D-tyrosyl-tRNA(tyr) deacylase [Bacillus cereus G9241], gi\|47556625\|gb... gi\|228608376, gi... - gi\|229175080\|ref\|ZP_04302597.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus MM3], gi\|228608376\|gb...	247.0	[0..1]	[146..1]
DTD_BACC1 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=dtd PE=3 SV=1 gi\|228585036, gi... - gi\|229198533\|ref\|ZP_04325237.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus m1293], gi\|228585036\|... DTD_BACCQ - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain Q1) GN=dtd PE=3 SV=1 gi\|229141145, gi... - gi\|229141145\|ref\|ZP_04269686.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-ST26], gi\|228642... gi\|229163354, gi... - gi\|229163354\|ref\|ZP_04291306.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus R309803], gi\|22862013... DTD_BACCZ - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ZK / E33L) GN=dtd PE=3 SV=1 DTD_BACC7 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain AH187) GN=dtd PE=3 SV=1 gi\|228935726, gi... - gi\|228935726\|ref\|ZP_04098539.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar andalo... gi\|206745771, gi... - gi\|206976019\|ref\|ZP_03236929.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus H3081.97], gi\|2067457... gi\|228659249, gi... - gi\|229123947\|ref\|ZP_04253139.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus 95/8201], gi\|22865924...	246.0	[0..1]	[146..1]
DTD_THEMA - D-tyrosyl-tRNA(Tyr) deacylase OS=Thermotoga maritima GN=dtd PE=3 SV=1 DTD_THEMA - D-aminoacyl-tRNA deacylase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) ...	246.0	[0..1]	[147..1]
gi\|206735395, gi... - gi\|206969707\|ref\|ZP_03230661.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH1134], gi\|206735395... DTD_BACCR - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / ... gi\|228954690, gi... - gi\|228954690\|ref\|ZP_04116713.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar kursta... gi\|228818081, gi... - gi\|228941574\|ref\|ZP_04104122.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar berlin... gi\|228923158, gi... - gi\|228923158\|ref\|ZP_04086449.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar huazho... gi\|228701674, gi... - gi\|229081670\|ref\|ZP_04214165.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock4-2], gi\|22870167... gi\|228981097, gi... - gi\|228981097\|ref\|ZP_04141398.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis Bt407], gi\|228... gi\|228974503, gi... - gi\|228974503\|ref\|ZP_04135070.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar thurin... gi\|228960679, gi... - gi\|228960679\|ref\|ZP_04122323.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar pakist... gi\|228602827, gi... - gi\|229180682\|ref\|ZP_04308022.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus 172560W], gi\|22860282... gi\|228636474, gi... - gi\|229146977\|ref\|ZP_04275339.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-ST24], gi\|228636... gi\|228653803, gi... - gi\|229129686\|ref\|ZP_04258654.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus BDRD-Cer4], gi\|228653... gi\|228671634, gi... - gi\|229111878\|ref\|ZP_04241424.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock1-15], gi\|2286716... gi\|228590924, gi... - gi\|229192617\|ref\|ZP_04319578.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus ATCC 10876], gi\|22859...	245.0	[0..1]	[146..1]
DTD_BACWK - D-aminoacyl-tRNA deacylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dtd PE=3 SV=1 gi\|228717253, gi... - gi\|229062101\|ref\|ZP_04199426.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH603], gi\|228717253\|... gi\|228747682, gi... - gi\|229013623\|ref\|ZP_04170754.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus mycoides DSM 2048], gi\|22874... gi\|229169149, gi... - gi\|229169149\|ref\|ZP_04296864.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus AH621], gi\|228614377\|...	245.0	[0..1]	[146..1]
DTD_BACAN - D-aminoacyl-tRNA deacylase OS=Bacillus anthracis GN=dtd PE=3 SV=1 gi\|254757687 - gi\|254757687\|ref\|ZP_05209714.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. Australia 94] gi\|254751355 - gi\|254751355\|ref\|ZP_05203392.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. Vollum] gi\|254741546 - gi\|254741546\|ref\|ZP_05199233.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. Kruger B] gi\|254736508 - gi\|254736508\|ref\|ZP_05194214.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. Western North... gi\|254684161 - gi\|254684161\|ref\|ZP_05148021.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. CNEVA-9066] DTD_BACAA - D-aminoacyl-tRNA deacylase OS=Bacillus anthracis (strain A0248) GN=dtd PE=3 SV=1 gi\|47529934, gi\|... - gi\|47529934\|ref\|YP_021283.1\| D-tyrosyl-tRNA deacylase [Bacillus anthracis str. 'Ames Ancestor'], gi\|... DTD_BACHK - D-tyrosyl-tRNA(Tyr) deacylase OS=Bacillus thuringiensis subsp. konkukian GN=dtd PE=3 SV=1 gi\|190561992, gi... - gi\|190567001\|ref\|ZP_03019917.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis Tsiankovskii-I], g... gi\|229117905, gi... - gi\|229117905\|ref\|ZP_04247267.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock1-3], gi\|22866556... gi\|30259134, gi\|... - gi\|30264476\|ref\|NP_846853.1\| D-tyrosyl-tRNA deacylase [Bacillus anthracis str. Ames], gi\|30259134\|gb... DTD_BACC0 - D-aminoacyl-tRNA deacylase OS=Bacillus cereus (strain AH820) GN=dtd PE=3 SV=1 gi\|229105044, gi... - gi\|229105044\|ref\|ZP_04235696.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock3-28], gi\|2286783... gi\|21402449, gi\|... - gi\|65321772\|ref\|ZP_00394731.1\| COG1490: D-Tyr-tRNAtyr deacylase [Bacillus anthracis str. A2012], ref... gi\|229098880, gi... - gi\|229098880\|ref\|ZP_04229816.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock3-29], gi\|2286845... gi\|229076037, gi... - gi\|229076037\|ref\|ZP_04209008.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus cereus Rock4-18], gi\|2287070... gi\|228772117, gi... - gi\|228987657\|ref\|ZP_04147771.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar tochig... gi\|228842649, gi... - gi\|228917042\|ref\|ZP_04080602.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus thuringiensis serovar pulsie... DTD_BACHK - D-aminoacyl-tRNA deacylase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=dtd PE=3 SV=... DTD_BACAC - D-aminoacyl-tRNA deacylase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=dtd PE=3 SV=1 gi\|49187296, gi\|... - gi\|49187296\|ref\|YP_030548.1\| D-tyrosyl-tRNA deacylase [Bacillus anthracis str. Sterne], gi\|49181223\|... gi\|165871955, gi... - gi\|165871955\|ref\|ZP_02216596.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0488], gi\|16... gi\|167528091, gi... - gi\|167636498\|ref\|ZP_02394795.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0442], gi\|16... gi\|167640708, gi... - gi\|167640708\|ref\|ZP_02398968.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0193], gi\|16... gi\|170688668, gi... - gi\|170688668\|ref\|ZP_02879873.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0465], gi\|17... gi\|170709263, gi... - gi\|170709263\|ref\|ZP_02899683.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0389], gi\|17... gi\|172081040, gi... - gi\|177653985\|ref\|ZP_02936026.1\| D-tyrosyl-tRNA(Tyr) deacylase [Bacillus anthracis str. A0174], gi\|17...	245.0	[0..1]	[146..1]

Back

Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVIQRVSE ARVEVDGSTV GAIGRGILVL LGVEKGDTER DAAWLAEKMA GLRIFEDDAG  60
   61 KMNLSVREVE GSILAVSQFT LAGNCAKGRR PSFDTAAPPD EGKRLYDRFV DLIRETGIPT 120
  121 ATGIFQADMK VHLVNDGPVT FILDTKSRSS ST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	2dboA
Description:	No description for 2dboA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits