YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995528, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995528, gi|....

Description	E-value	Query Range	Subject Range
gi\|118413733, gi... - gi\|86154408\|ref\|ZP_01072576.1\| Flagellar basal body-associated protein FliL [Campylobacter fetus sub...	142.0	[0..1]	[173..1]
gi\|34558258 - gi\|34558258\|ref\|NP_908073.1\| flagellar basal body-associated protein FliL [Wolinella succinogenes DS... gi\|34483977 - gi\|34483977\|emb\|CAE10973.1\| HYPOTHETICAL PROTEIN-Flagellar basal body associated protein [Wolinella ...	142.0	[0..1]	[173..1]
gi\|124116054, gi... - gi\|153213254\|ref\|ZP_01948666.1\| flagellar protein FliL, putative [Vibrio cholerae 1587], gi\|12411605... gi\|75816892, gi\|... - gi\|75816892\|ref\|ZP_00747350.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae V52... gi\|75819208, gi\|... - gi\|75819208\|ref\|ZP_00749300.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae V51... gi\|254291363, gi... - gi\|254291363\|ref\|ZP_04962156.1\| flagellar protein FliL, putative [Vibrio cholerae AM-19226], gi\|1977... gi\|149740770, gi... - gi\|153825619\|ref\|ZP_01978286.1\| flagellar protein FliL, putative [Vibrio cholerae MZO-2], gi\|1497407... gi\|121548989, gi... - gi\|121586822\|ref\|ZP_01676604.1\| flagellar protein FliL, putative [Vibrio cholerae 2740-80], gi\|12154...	141.0	[0..1]	[173..1]
gi\|229369988, gi... - gi\|229607333\|ref\|YP_002877981.1\| flagellar biosynthesis protein FliL [Vibrio cholerae MJ-1236], gi\|2... gi\|229337710, gi... - gi\|229524129\|ref\|ZP_04413534.1\| flagellar biosynthesis protein FliL [Vibrio cholerae bv. albensis VL... gi\|229341005, gi... - gi\|229522080\|ref\|ZP_04411497.1\| flagellar biosynthesis protein FliL [Vibrio cholerae TM 11079-80], g... gi\|229519111, gi... - gi\|229519111\|ref\|ZP_04408554.1\| flagellar biosynthesis protein FliL [Vibrio cholerae RC9], gi\|229343... gi\|124118087, gi... - gi\|153223621\|ref\|ZP_01953975.1\| flagellar protein FliL, putative [Vibrio cholerae MAK 757], gi\|12411... gi\|229355293, gi... - gi\|229507788\|ref\|ZP_04397293.1\| flagellar biosynthesis protein FliL [Vibrio cholerae BX 330286], gi\|... gi\|153803036, gi... - gi\|153803036\|ref\|ZP_01957622.1\| flagellar protein FliL, putative [Vibrio cholerae MZO-3], gi\|1241214... gi\|227010140, gi... - gi\|227082252\|ref\|YP_002810803.1\| putative flagellar protein FliL [Vibrio cholerae M66-2], gi\|2270101... gi\|126510465, gi... - gi\|153818970\|ref\|ZP_01971637.1\| flagellar protein FliL, putative [Vibrio cholerae NCTC 8457], gi\|126... gi\|229351940, gi... - gi\|229511975\|ref\|ZP_04401454.1\| flagellar biosynthesis protein FliL [Vibrio cholerae B33], gi\|229351... gi\|9656677, gi\|1... - gi\|9656677\|gb\|AAF95272.1\| flagellar protein FliL, putative [Vibrio cholerae O1 biovar El Tor str. N1... gi\|11355897 - pir\|\|A82117 probable flagellar protein FliL VC2127 [imported] - Vibrio cholerae (strain N16961 serog... gi\|153828598, gi... - gi\|153828598\|ref\|ZP_01981265.1\| putative flagellar protein FliL [Vibrio cholerae 623-39], gi\|1488758... gi\|254844917, gi... - gi\|75830316\|ref\|ZP_00759596.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae MO1... gi\|75827430, gi\|... - gi\|75827430\|ref\|ZP_00756865.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae O39... gi\|75824669, gi\|... - gi\|75824669\|ref\|ZP_00754117.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae RC3...	141.0	[0..1]	[173..1]
gi\|149749741, gi... - gi\|153841426\|ref\|ZP_01993403.1\| flagellar basal body-associated protein FliL [Vibrio parahaemolyticu... gi\|28807236, gi\|... - gi\|4322003\|gb\|AAD15906.1\| polar flagellar protein FliL [Vibrio parahaemolyticus], gi\|28807236\|dbj\|BA... gi\|28899017, gi\|... - gi\|28899017\|ref\|NP_798622.1\| flagellar basal body-associated protein FliL [Vibrio parahaemolyticus R...	140.0	[0..1]	[173..1]
gi\|37680659, gi\|... - gi\|37680659\|ref\|NP_935268.1\| flagellar basal body-associated protein FliL [Vibrio vulnificus YJ016],... gi\|27361433, gi\|... - gi\|27365286\|ref\|NP_760814.1\| flagellar basal body-associated protein FliL [Vibrio vulnificus CMCP6],...	140.0	[0..1]	[173..1]
gi\|112799969, gi... - gi\|157165347\|ref\|YP_001466934.1\| flagellar basal body-associated protein FliL [Campylobacter concisu...	139.0	[0..13]	[173..13]
gi\|68246653, gi\|... - gi\|69257976\|ref\|ZP_00606818.1\| Flagellar basal body-associated protein FliL [Magnetococcus sp. MC-1]...	138.0	[0..18]	[173..17]
gi\|77544857, gi\|... - gi\|77918774\|ref\|YP_356589.1\| flagellar basal body-associated protein [Pelobacter carbinolicus DSM 23...	137.0	[0..1]	[173..1]
gi\|75856748, gi\|... - gi\|75856748\|ref\|ZP_00764371.1\| COG1580: Flagellar basal body-associated protein [Vibrio sp. Ex25], g...	137.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADEKAPVE GAPKDKKKLF IIIGAAAVVI IALAVVFLGG GKKEKGKEGE AEAKVEQKAE  60
   61 GGHGGGKEGA AGAVATAFAL EPFIVNIYDG QELRYLRVKV EFETATPDAK AEIESRQAPL 120
  121 RDAILVLLTT KTLQDIQDLQ GKNQLRDEIL VAANKILPPG KVTKVYFTDF VVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.958607
Match:	PF03748.5
Description:	No description for PF03748.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.832	N/A	N/A	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits