YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982283, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982283, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195557, gi\|... - gi\|78224302\|ref\|YP_386049.1\| flagellar assembly protein fliH, putative [Geobacter metallireducens GS...	202.0	[0..2]	[292..3]
gi\|24374738, gi\|... - gi\|24374738\|ref\|NP_718781.1\| flagellar assembly protein H [Shewanella oneidensis MR-1], gi\|24349400\|... SO3226 - flagellar assembly protein FliH	155.0	[0..2]	[279..28]
gi\|68556789, gi\|... - gi\|94314182\|ref\|YP_587391.1\| flagellar assembly protein H [Ralstonia metallidurans CH34], gi\|9335803...	153.0	[0..14]	[253..53]
gi\|157067091, gi... - gi\|75195995\|ref\|ZP_00706065.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [E...	147.0	[0..15]	[241..2]
Q66BR9\|Q66BR9_YERPS - Flagellar assembly protein FliH - Yersinia pseudotuberculosis gi\|169751152, gi... - gi\|170024618\|ref\|YP_001721123.1\| flagellar assembly protein H [Yersinia pseudotuberculosis YPIII], g... gi\|51589319, gi\|... - gi\|51596037\|ref\|YP_070228.1\| flagellar assembly protein H [Yersinia pseudotuberculosis IP 32953], gi...	146.0	[0..13]	[251..3]
gi\|77975708 - gi\|77975708\|ref\|ZP_00831242.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	146.0	[0..13]	[251..3]
gi\|167420458, gi... - gi\|167420458\|ref\|ZP_02312211.1\| flagellar assembly protein FliH [Yersinia pestis biovar Orientalis s... gi\|167049403, gi... - gi\|167401014\|ref\|ZP_02306517.1\| flagellar assembly protein FliH [Yersinia pestis biovar Antiqua str.... gi\|167468919 - gi\|167468919\|ref\|ZP_02333623.1\| flagellar assembly protein FliH [Yersinia pestis FV-1] gi\|167055160, gi... - gi\|167425761\|ref\|ZP_02317514.1\| flagellar assembly protein FliH [Yersinia pestis biovar Mediaevalis ... gi\|108807200, gi... - gi\|108807200\|ref\|YP_651116.1\| flagellar assembly protein H [Yersinia pestis Antiqua], gi\|108779113\|g... gi\|186895142, gi... - gi\|186895142\|ref\|YP_001872254.1\| flagellar assembly protein H [Yersinia pseudotuberculosis PB1/+], g... gi\|149366224, gi... - gi\|149366224\|ref\|ZP_01888259.1\| flagellar assembly protein FliH [Yersinia pestis CA88-4125], gi\|1492... gi\|161484785 - gi\|161484785\|ref\|NP_669784.2\| flagellar assembly protein H [Yersinia pestis KIM] gi\|165922212, gi... - gi\|165926008\|ref\|ZP_02221840.1\| flagellar assembly protein FliH [Yersinia pestis biovar Orientalis s... gi\|161511403 - gi\|161511403\|ref\|NP_992921.2\| flagellar assembly protein H [Yersinia pestis biovar Microtus str. 910... gi\|166207966, gi... - gi\|166210786\|ref\|ZP_02236821.1\| flagellar assembly protein FliH [Yersinia pestis biovar Antiqua str.... gi\|229896274, gi... - gi\|229896274\|ref\|ZP_04511444.1\| flagellar assembly protein FliH [Yersinia pestis Pestoides A], gi\|22... gi\|166010875, gi... - gi\|166010875\|ref\|ZP_02231773.1\| flagellar assembly protein FliH [Yersinia pestis biovar Antiqua str.... gi\|229897211, gi... - gi\|229897211\|ref\|ZP_04512367.1\| flagellar assembly protein FliH [Yersinia pestis biovar Orientalis s... gi\|229897938, gi... - gi\|229897938\|ref\|ZP_04513089.1\| flagellar assembly protein FliH [Yersinia pestis biovar Orientalis s... gi\|25510422 - pir\|\|AB0223 flagellar assembly protein FliH [imported] - Yersinia pestis (strain CO92) gi\|115347560, gi... - gi\|218928949\|ref\|YP_002346824.1\| flagellar assembly protein H [Yersinia pestis CO92], gi\|16122081\|re... gi\|77635997, gi\|... - gi\|77635997\|ref\|ZP_00798075.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y... gi\|152959914, gi... - gi\|77628900\|ref\|ZP_00791486.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y... gi\|165913273, gi... - gi\|89105446\|ref\|ZP_01177965.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [Y...	146.0	[0..13]	[251..3]
gi\|36785298, gi\|... - gi\|37525869\|ref\|NP_929213.1\| flagellar assembly protein H [Photorhabdus luminescens subsp. laumondii...	145.0	[0..13]	[251..3]
gi\|76789298, gi\|... - gi\|76789298\|ref\|YP_328384.1\| type III secretion system protein [Chlamydia trachomatis A/HAR-13], gi\|...	145.0	[0..40]	[263..9]
gi\|22126361, gi\|... - gi\|22126361\|ref\|NP_669784.1\| flagellar assembly protein [Yersinia pestis KIM], gi\|21959345\|gb\|AAM860... gi\|45436242, gi\|... - gi\|45441382\|ref\|NP_992921.1\| flagellar assembly protein [Yersinia pestis biovar Microtus str. 91001]...	145.0	[0..13]	[251..10]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKASRII KVDQSPNQAI RSYSFGFIAA DAPQELPPEA DGFVPFALGT PVPLPGLQSA  60
   61 EEPDPDPVVP FNLEGKVVLA EDELQARVDE VFRNGMDEGR RQAERGLANV FKSLRDGVAA 120
  121 LTGLRSRVMK ESEEDLLRLA VMIARKIVQR EVAQDPQVLA AIVAAAVGGC TERDRVVVRL 180
  181 NPDDYTQVSA NRQAFLAGLG EESAITLAPD ESIGPGGCLV ETATGTVDAR IEAQLDEIYR 240
  241 SLLEERSAPV EPSASPDTDS RADLAFGGEE TIAPFKGQGA WVKGSEEKPR DDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits