YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995517, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995517, gi|....

Description	E-value	Query Range	Subject Range
gi\|48847140, gi\|... - gi\|78224305\|ref\|YP_386052.1\| flagellar hook-basal body complex protein FliE [Geobacter metallireduce...	99.0	[0..1]	[100..1]
gi\|221562890, gi... - gi\|222053601\|ref\|YP_002535963.1\| flagellar hook-basal body complex subunit FliE [Geobacter sp. FRC-3...	98.0	[0..2]	[100..3]
gi\|88934000, gi\|... - gi\|88934000\|ref\|ZP_01139644.1\| Flagellar hook-basal body complex protein FliE [Geobacter uraniumredu...	98.0	[0..2]	[100..3]
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	96.0	[0..2]	[100..22]
FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima GN=fliE PE=3 SV=1	95.0	[0..1]	[100..1]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	94.0	[0..2]	[100..28]
gi\|67154579 - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi... gi\|67154579, gi\|... - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi...	93.0	[0..4]	[100..37]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	93.0	[0..2]	[100..3]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	93.0	[0..2]	[100..28]
FLIE_DESHD - Flagellar hook-basal body complex protein FliE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 1...	93.0	[0..1]	[100..13]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDGIESGLG IAQAFPSVTG EAKPGNLAAD GGKFFGELVS KVSELQAQSD TAIKGLVSGE  60
   61 SKGLHEVMIA MEKSSISFQF LSQVRNKAVE AYQEVMRMQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.236572
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.992	N/A	N/A	a.7.12	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits