YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995493, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995493, gi|....

Description	E-value	Query Range	Subject Range
gi\|41205692 - gi\|41205692\|gb\|AAR99612.1\| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]	232.0	[0..1]	[292..3]
gi\|7437238 - pir\|\|H69105 dTDP-glucose 4,6-dehydratase - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15679777, gi\|... - gi\|2622920\|gb\|AAB86255.1\| dTDP-glucose 4,6-dehydratase [Methanothermobacter thermautotrophicus str. ...	223.0	[0..2]	[293..3]
gi\|160876126, gi... - gi\|160876126\|ref\|YP_001555442.1\| dTDP-glucose 4,6-dehydratase [Shewanella baltica OS195], gi\|1608616...	220.0	[0..1]	[292..1]
gi\|99077994, gi\|... - gi\|99077994\|ref\|YP_611253.1\| dTDP-glucose 4,6-dehydratase [Silicibacter sp. TM1040], gi\|99034937\|gb\|...	220.0	[0..1]	[292..1]
gi\|22726352, gi\|... - gi\|32456000\|ref\|NP_862002.1\| rb127 [Ruegeria sp. PR1b], gi\|22726352\|gb\|AAN05148.1\| RB127 [Ruegeria s...	218.0	[0..1]	[292..1]
SO3167 - dTDP-glucose 46-dehydratase gi\|24374680, gi\|... - gi\|24374680\|ref\|NP_718723.1\| dTDP-glucose 4,6-dehydratase [Shewanella oneidensis MR-1], gi\|24349325\|...	217.0	[0..1]	[292..1]
gi\|94499405, gi\|... - gi\|94499405\|ref\|ZP_01305942.1\| dTDP-glucose 4,6-dehydratase [Oceanobacter sp. RED65], gi\|94428159\|gb...	215.0	[0..2]	[292..4]
gi\|110833771, gi... - gi\|110833771\|ref\|YP_692630.1\| dTDP-glucose 4,6-dehydratase [Alcanivorax borkumensis SK2], gi\|1106468...	215.0	[0..1]	[292..1]
gi\|4240415 - gi\|4240415\|gb\|AAD13546.1\| NDP-hexose 4,6-dehydratase homolog [Streptomyces cyanogenus]	215.0	[0..2]	[292..3]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFVTGGTG FVGGHVRRAL LERGHSLRLL VHQRSEGVEA GIEQVEGDVT RPDTFAGAVA  60
   61 GCDATVNLVG IIREFPGRGI TFEKLHVEAT RNVVEAARAA GIRRHLQMSA LATRPDATAA 120
  121 YHRTKWRAEE VVRQSELDWT IFRPSLIFGP KGAFVDMLAG FVRRFPAVPV VGDGTYRLQP 180
  181 VSVDDVARCF ALALDMPETF GQTYELCGPD RLTYNEVLDI IGRVLGKGHV VKIPQPLGLL 240
  241 KLVVPIMQGF SFFPLTMDQI TLLTEENICS NAWPSVFGFE PCRFEAGIAS FLHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1g1aA
Description:	dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.03099072397093	bayes_pls_golite062009
oxidoreductase activity	0.442294542097958	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: