YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982250, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982250, gi|....

Description	E-value	Query Range	Subject Range
LIPM_BACHD - Octanoyltransferase LipM OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... LIPM_BACHD - Octanoyltransferase LipM OS=Bacillus halodurans GN=lipM PE=3 SV=1	263.0	[0..4]	[266..2]
gi\|52080986, gi\|... - gi\|52786362\|ref\|YP_092191.1\| YqhM [Bacillus licheniformis ATCC 14580], gi\|52348864\|gb\|AAU41498.1\| Yq...	257.0	[0..1]	[266..1]
gi\|221314700 - gi\|221314700\|ref\|ZP_03596505.1\| hypothetical protein BsubsN3_13367 [Bacillus subtilis subsp. subtili... gi\|221323899 - gi\|221323899\|ref\|ZP_03605193.1\| hypothetical protein BsubsS_13417 [Bacillus subtilis subsp. subtilis... gi\|221319623 - gi\|221319623\|ref\|ZP_03600917.1\| hypothetical protein BsubsJ_13288 [Bacillus subtilis subsp. subtilis... LIPM_BACSU - Octanoyltransferase LipM OS=Bacillus subtilis (strain 168) GN=lipM PE=1 SV=2 YQHM_BACSU, LIPM... - Uncharacterized protein yqhM OS=Bacillus subtilis GN=yqhM PE=4 SV=2, Octanoyltransferase LipM OS=Bac...	255.0	[0..1]	[266..1]
gi\|254736319 - gi\|254736319\|ref\|ZP_05194025.1\| putative lipoate-protein ligase A [Bacillus anthracis str. Western N... gi\|49181036, gi\|... - gi\|49187109\|ref\|YP_030361.1\| lipoate-protein ligase A, putative [Bacillus anthracis str. Sterne], gi... gi\|254721805 - gi\|254721805\|ref\|ZP_05183594.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A1055] gi\|47529724, gi\|... - gi\|47529724\|ref\|YP_021073.1\| lipoate-protein ligase A, putative [Bacillus anthracis str. 'Ames Ances... gi\|254683971 - gi\|254683971\|ref\|ZP_05147831.1\| putative lipoate-protein ligase A [Bacillus anthracis str. CNEVA-906... gi\|30264282, gi\|... - gi\|30264282\|ref\|NP_846659.1\| lipoate-protein ligase A, putative [Bacillus anthracis str. Ames], gi\|3... gi\|229266433, gi... - gi\|229602025\|ref\|YP_002868501.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0248], ... gi\|227816983, gi... - gi\|227816983\|ref\|YP_002816992.1\| putative lipoate-protein ligase A [Bacillus anthracis str. CDC 684]... gi\|167513457, gi... - gi\|167638609\|ref\|ZP_02396885.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0193], g... gi\|170668691, gi... - gi\|170687496\|ref\|ZP_02878713.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0465], g... gi\|170709031, gi... - gi\|170709031\|ref\|ZP_02899461.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0389], g... gi\|177654807, gi... - gi\|177654807\|ref\|ZP_02936564.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0174], g... gi\|21402259, gi\|... - gi\|65321593\|ref\|ZP_00394552.1\| COG0095: Lipoate-protein ligase A [Bacillus anthracis str. A2012], re... gi\|190563096, gi... - gi\|190566177\|ref\|ZP_03019096.1\| putative lipoate-protein ligase A [Bacillus anthracis Tsiankovskii-I... LIPM_BACAN - Octanoyltransferase LipM OS=Bacillus anthracis GN=lipM PE=3 SV=1 gi\|164711273, gi... - gi\|165872990\|ref\|ZP_02217612.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0488], g... gi\|167530079, gi... - gi\|167634627\|ref\|ZP_02392947.1\| putative lipoate-protein ligase A [Bacillus anthracis str. A0442], g... gi\|254757880 - gi\|254757880\|ref\|ZP_05209907.1\| putative lipoate-protein ligase A [Bacillus anthracis str. Australia... gi\|254754009 - gi\|254754009\|ref\|ZP_05206044.1\| putative lipoate-protein ligase A [Bacillus anthracis str. Vollum] gi\|254741357 - gi\|254741357\|ref\|ZP_05199044.1\| putative lipoate-protein ligase A [Bacillus anthracis str. Kruger B]	252.0	[0..1]	[266..1]
gi\|218536825, gi... - gi\|218905344\|ref\|YP_002453178.1\| putative lipoate-protein ligase A [Bacillus cereus AH820], gi\|21853... gi\|225866191, gi... - gi\|225866191\|ref\|YP_002751569.1\| putative lipoate-protein ligase A [Bacillus cereus 03BB102], gi\|225... gi\|221241713, gi... - gi\|222097655\|ref\|YP_002531712.1\| lipoate-protein ligase A [Bacillus cereus Q1], gi\|221241713\|gb\|ACM1... gi\|228929252, gi... - gi\|228929252\|ref\|ZP_04092279.1\| hypothetical protein bthur0010_39410 [Bacillus thuringiensis serovar... gi\|228916843, gi... - gi\|228916843\|ref\|ZP_04080406.1\| hypothetical protein bthur0012_40560 [Bacillus thuringiensis serovar... gi\|228772372, gi... - gi\|228987400\|ref\|ZP_04147520.1\| hypothetical protein bthur0001_40720 [Bacillus thuringiensis serovar... gi\|228947925, gi... - gi\|228947925\|ref\|ZP_04110212.1\| hypothetical protein bthur0007_40520 [Bacillus thuringiensis serovar... gi\|228625764, gi... - gi\|229157807\|ref\|ZP_04285882.1\| hypothetical protein bcere0010_39880 [Bacillus cereus ATCC 4342], gi... gi\|196034806, gi... - gi\|196034806\|ref\|ZP_03102213.1\| putative lipoate-protein ligase A [Bacillus cereus W], gi\|195992345\|... gi\|229123726, gi... - gi\|229123726\|ref\|ZP_04252921.1\| hypothetical protein bcere0016_40130 [Bacillus cereus 95/8201], gi\|2... gi\|51974756, gi\|... - gi\|52141287\|ref\|YP_085542.1\| lipoate-protein ligase A [Bacillus cereus E33L], gi\|51974756\|gb\|AAU1630... gi\|229198335, gi... - gi\|229198335\|ref\|ZP_04325042.1\| hypothetical protein bcere0001_38650 [Bacillus cereus m1293], gi\|228... gi\|228597078, gi... - gi\|229186451\|ref\|ZP_04313615.1\| hypothetical protein bcere0004_39960 [Bacillus cereus BGSC 6E1], gi\|... gi\|42739258, gi\|... - gi\|42783330\|ref\|NP_980577.1\| lipoate-protein ligase A, putative [Bacillus cereus ATCC 10987], gi\|427... gi\|206976240, gi... - gi\|206976240\|ref\|ZP_03237148.1\| putative lipoate-protein ligase A [Bacillus cereus H3081.97], gi\|206... gi\|49330137, gi\|... - gi\|49478581\|ref\|YP_038271.1\| lipoate-protein ligase A [Bacillus thuringiensis serovar konkukian str.... gi\|217063066, gi... - gi\|217961699\|ref\|YP_002340269.1\| putative lipoate-protein ligase A [Bacillus cereus AH187], gi\|21706... gi\|196041638, gi... - gi\|196041638\|ref\|ZP_03108930.1\| putative lipoate-protein ligase A [Bacillus cereus NVH0597-99], gi\|1... gi\|47569470, gi\|... - gi\|47569470\|ref\|ZP_00240151.1\| lipoate-protein ligase A [Bacillus cereus G9241], gi\|47553885\|gb\|EAL1... gi\|196046284, gi... - gi\|196046284\|ref\|ZP_03113510.1\| putative lipoate-protein ligase A [Bacillus cereus 03BB108], gi\|1960...	251.0	[0..1]	[266..1]
gi\|163941969, gi... - gi\|89207049\|ref\|ZP_01185598.1\| Biotin/lipoate A/B protein ligase [Bacillus weihenstephanensis KBAB4]... gi\|229135032, gi... - gi\|229135032\|ref\|ZP_04263837.1\| hypothetical protein bcere0014_39380 [Bacillus cereus BDRD-ST196], g...	251.0	[0..1]	[266..1]
gi\|75761459, gi\|... - gi\|75761459\|ref\|ZP_00741426.1\| Lipoate-protein ligase A [Bacillus thuringiensis serovar israelensis ...	250.0	[0..1]	[266..5]
gi\|218231875, gi... - gi\|218231875\|ref\|YP_002369012.1\| putative lipoate-protein ligase A [Bacillus cereus B4264], gi\|21815... gi\|228590997, gi... - gi\|229192420\|ref\|ZP_04319383.1\| hypothetical protein bcere0002_40730 [Bacillus cereus ATCC 10876], g... LIPM_BACCR - Octanoyltransferase LipM OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NC... gi\|228799239, gi... - gi\|228960475\|ref\|ZP_04122126.1\| hypothetical protein bthur0005_39430 [Bacillus thuringiensis serovar... gi\|228954494, gi... - gi\|228954494\|ref\|ZP_04116519.1\| hypothetical protein bthur0006_38640 [Bacillus thuringiensis serovar... gi\|228849560, gi... - gi\|228910043\|ref\|ZP_04073863.1\| hypothetical protein bthur0013_41920 [Bacillus thuringiensis IBL 200... gi\|229081467, gi... - gi\|229081467\|ref\|ZP_04213966.1\| hypothetical protein bcere0023_41010 [Bacillus cereus Rock4-2], gi\|2... gi\|228723360, gi... - gi\|229047903\|ref\|ZP_04193479.1\| hypothetical protein bcere0027_38780 [Bacillus cereus AH676], gi\|228... gi\|228980893, gi... - gi\|228980893\|ref\|ZP_04141197.1\| hypothetical protein bthur0002_40570 [Bacillus thuringiensis Bt407],... gi\|228974301, gi... - gi\|228974301\|ref\|ZP_04134870.1\| hypothetical protein bthur0003_40550 [Bacillus thuringiensis serovar... gi\|228631017, gi... - gi\|229152409\|ref\|ZP_04280601.1\| hypothetical protein bcere0011_39470 [Bacillus cereus m1550], gi\|228... gi\|229146782, gi... - gi\|229146782\|ref\|ZP_04275147.1\| hypothetical protein bcere0012_39220 [Bacillus cereus BDRD-ST24], gi... gi\|229129487, gi... - gi\|229129487\|ref\|ZP_04258458.1\| hypothetical protein bcere0015_39300 [Bacillus cereus BDRD-Cer4], gi... gi\|229111683, gi... - gi\|229111683\|ref\|ZP_04241231.1\| hypothetical protein bcere0018_39280 [Bacillus cereus Rock1-15], gi\|...	250.0	[0..1]	[266..1]
gi\|89200842, gi\|... - gi\|89200842\|ref\|ZP_01179592.1\| Biotin/lipoate A/B protein ligase [Bacillus cereus subsp. cytotoxis N...	248.0	[0..1]	[266..1]
gi\|89086070, gi\|... - gi\|89099224\|ref\|ZP_01172102.1\| YqhM [Bacillus sp. NRRL B-14911], gi\|89086070\|gb\|EAR65193.1\| YqhM [Ba...	246.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPAWRLID TGPLDGPRNM AVDEALLRHF GQGAAPVLRL YGWEPPAFSV GRFQKADEAI  60
   61 DRERCRRADI PVVRRITGGG LIYHGPELTY SLVCAPRHIA GARGVKESFR ALTGFLFRFY 120
  121 GELGLAACWA ADDAAGDARL GARTPLCFAG REESDIVIRG RKIGGNAQRR LRDAIFQHGS 180
  181 IPLADGVGEA LPFFRSVPAG LREGTTDLAA LGVAGGADRL RALLARSFSA AHGVALVPSE 240
  241 LSPAERETAD RLLRERYGND DWNFGGENG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1vqzA
Description:	Crystal structure of putative Lipoate-protein ligase (np_345629.1) from Streptococcus pneumoniae tigr4 at 1.99 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: