YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995484, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995484, gi|....

Description	E-value	Query Range	Subject Range
gi\|85719356 - gi\|85719356\|gb\|ABC75361.1\| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula]	154.0	[0..3]	[124..31]
gi\|68229731, gi\|... - gi\|68229731\|ref\|ZP_00568923.1\| Glycine cleavage H-protein [Frankia sp. EAN1pec], gi\|68202722\|gb\|EAN1...	152.0	[0..2]	[123..72]
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1 GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice) GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1	151.0	[0..3]	[124..41]
GCSH_FLAPR - Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1	149.0	[0..3]	[124..38]
GCSH_FLAAN - Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1	149.0	[0..3]	[124..38]
gi\|437993, gi\|21... - gi\|437993\|emb\|CAA81073.1\| H-protein [Flaveria cronquistii], pir\|\|S60195 glycine cleavage system prot... gi\|437999, gi\|36... - pir\|\|S60199 glycine cleavage system protein H precursor (clone HFP20) - Flaveria pringlei, gi\|43799...	149.0	[0..3]	[124..38]
gi\|109129381 - gi\|109129381\|ref\|XP_001108911.1\| PREDICTED: similar to Glycine cleavage system H protein, mitochondr...	149.0	[0..3]	[124..88]
GCSH2_ARATH - Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 SV=1	148.0	[0..2]	[124..31]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METYFTKEHE WVKVKEGVAA VGITEYAAHQ LGDVTFVELP QVGKQVKQFE VLAAIESVKA  60
   61 ASDIYAPVSG KVTQVNEALD DRPEIVNEAA EEAGWIAWIE MGDTSELNGL LTREQYDEYL 120
  121 KGLE

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Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1dxmA
Description:	Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminomethyltransferase activity	7.15454688996532	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	6.56199545993139	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	6.56199545993139	bayes_pls_golite062009
acetyl-CoA carboxylase activity	2.30995434688093	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.93346020821958	bayes_pls_golite062009
CoA carboxylase activity	1.92420834470262	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	1.62422217856347	bayes_pls_golite062009
catalytic activity	1.39099902011318	bayes_pls_golite062009
ligase activity	0.56894584941056	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: