YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995473, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995473, gi|....

Description	E-value	Query Range	Subject Range
CYC7_GEOMG - Cytochrome c7 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2902 PE=1 ...	127.0	[0..1]	[90..1]
gi\|24021254 - gi\|24021254\|gb\|AAN40982.1\| PpcA [Geobacter sulfurreducens] gi\|39995719, gi\|... - gi\|39995719\|ref\|NP_951670.1\| cytochrome c3 [Geobacter sulfurreducens PCA], gi\|39982483\|gb\|AAR33943.1...	127.0	[0..1]	[90..1]
gi\|42543242 - gi\|42543242\|pdb\|1OS6\|A Chain A, Cytochrome C7 (Ppca) From Geobacter Sulfurreducens	100.0	[0..21]	[90..1]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFIPATAAL LIILAGTAGA IDKITYPTRI GAVVFPHKKH QDALGECRGC HEKGPGRIDG  60
   61 FDKVMAHGKG CKGCHEEMKI GPVRCGDCHK GGSTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.045757
Match:	1os6A
Description:	Cytochrome c7 (PpcA) from Geobacter sulfurreducens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.572741711995569	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: