YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995203, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995203, gi|....

Description	E-value	Query Range	Subject Range
gi\|77994738, gi\|... - gi\|78042623\|ref\|YP_359774.1\| putative heterodisulfide reductase, C subunit [Carboxydothermus hydroge...	147.0	[0..2]	[182..11]
gi\|78224614, gi\|... - gi\|78224614\|ref\|YP_386361.1\| heterodisulfide reductase subunit [Geobacter metallireducens GS-15], gi...	144.0	[0..1]	[182..35]
gi\|115511708, gi... - gi\|117622584\|ref\|YP_851497.1\| hypothetical protein APECO1_1687 [Escherichia coli APEC O1], gi\|115511...	142.0	[0..1]	[179..252]
gi\|91209376, gi\|... - gi\|91209376\|ref\|YP_539362.1\| putative electron transport protein YkgF [Escherichia coli UTI89], gi\|9...	141.0	[0..1]	[179..294]
gi\|30061828, gi\|... - gi\|30061828\|ref\|NP_835999.1\| hypothetical protein S0280 [Shigella flexneri 2a str. 2457T], gi\|300400... gi\|24111702, gi\|... - gi\|24111702\|ref\|NP_706212.1\| hypothetical protein SF0259 [Shigella flexneri 2a str. 301], gi\|2405048...	140.0	[0..1]	[179..294]
gi\|110640580, gi... - gi\|110640580\|ref\|YP_668308.1\| putative electron transport protein YkgF [Escherichia coli 536], gi\|11... gi\|191173561, gi... - gi\|75238506\|ref\|ZP_00722500.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li...	140.0	[0..1]	[179..294]
gi\|218703591, gi... - gi\|218703591\|ref\|YP_002411110.1\| putative oxidoreductase subunit with NAD(P)-binding domain and ferr... gi\|227884680, gi... - gi\|227884680\|ref\|ZP_04002485.1\| electron transport protein ykgF [Escherichia coli 83972], gi\|2278382... gi\|110613925, gi... - gi\|110804377\|ref\|YP_687897.1\| hypothetical protein SFV_0318 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|26246321, gi\|... - gi\|26246321\|ref\|NP_752360.1\| putative electron transport protein ykgF [Escherichia coli CFT073], gi\|...	140.0	[0..1]	[179..294]
gi\|254791476, gi... - gi\|254791476\|ref\|YP_003076313.1\| predicted amino acid dehydrogenase with NAD(P)-binding domain and f... gi\|13359802, gi\|... - gi\|15829599\|ref\|NP_308372.1\| hypothetical protein ECs0345 [Escherichia coli O157:H7], gi\|13359802\|db... gi\|209398208, gi... - gi\|209398208\|ref\|YP_002268936.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. ... gi\|25304912, gi\|... - pir\|\|E85522 hypothetical protein ykgF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15800021, gi\|... - gi\|15800021\|ref\|NP_286033.1\| hypothetical protein Z0385 [Escherichia coli O157:H7 EDL933], gi\|125131... gi\|195937797 - gi\|195937797\|ref\|ZP_03083179.1\| hypothetical protein EscherichcoliO157_15339 [Escherichia coli O157:... gi\|13359802, gi\|... - gi\|15829599\|ref\|NP_308372.1\| hypothetical protein ECs0345 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208807074, gi... - gi\|208807074\|ref\|ZP_03249411.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|208732482, gi... - gi\|208815834\|ref\|ZP_03257013.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|208823068, gi... - gi\|208823068\|ref\|ZP_03263386.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|168775384, gi... - gi\|187769039\|gb\|EDU32883.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC419... gi\|188999843, gi... - gi\|188999843\|gb\|EDU68829.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC407... gi\|189371660, gi... - gi\|189371660\|gb\|EDU90076.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC869... gi\|168799764, gi... - gi\|189377872\|gb\|EDU96288.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC508... gi\|188016500, gi... - gi\|188016500\|gb\|EDU54622.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC411... gi\|168755869, gi... - gi\|189356878\|gb\|EDU75297.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC440... gi\|168769670, gi... - gi\|189361318\|gb\|EDU79737.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC448...	140.0	[0..1]	[179..294]
gi\|242376098, gi... - gi\|251783825\|ref\|YP_002998129.1\| hypothetical protein B21_00267 [Escherichia coli BL21], gi\|24237609... gi\|83586347, gi\|... - gi\|83586347\|ref\|ZP_00924982.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li... gi\|89107181, gi\|... - gi\|89107181\|ref\|AP_000961.1\| predicted amino acid dehydrogenase with NAD(P)-binding domain and ferri... gi\|169887766, gi... - gi\|170079931\|ref\|YP_001729251.1\| amino acid dehydrogenase [Escherichia coli str. K-12 substr. DH10B]... YKGF_ECOLI - Putative electron transport protein ykgF - Escherichia coli EG13583 - ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component / Ferridoxin... gi\|253972283, gi... - gi\|254160382\|ref\|YP_003043490.1\| predicted amino acid dehydrogenase with NAD(P)-binding domain and f... EG13583 - ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component / Ferridoxin... gi\|253774704, gi... - gi\|254287185\|ref\|YP_003052933.1\| predicted amino acid dehydrogenase with NAD(P)-binding domain and f...	140.0	[0..1]	[179..294]
gi\|187732922, gi... - gi\|75176818\|ref\|ZP_00696934.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li...	140.0	[0..1]	[179..294]

Back

Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGFVRKVE ALSGSSVRRC FQCGKCSAGC PMRSFMEHPP NRIVRFLQLG QYERVLAGRS  60
   61 IWYCASCETC TTRCPNKVDL AAIMDALRKC SWDAKGPSKE SLVQLANRLF IENIRTYGRQ 120
  121 YEMRLAAVFN VKSGQFLKDL MLGPKLITKG KLRMFHQKNR NIAEIENIFA RIEALRKKGE 180
  181 AP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	1c4aA
Description:	Fe-only hydrogenase, catalytic domain; Fe-only hydrogenase, N-terminal domain; Fe-only hydrogenase, second domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity	0.100797464100664	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: