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View Structure Prediction Details

Protein: gi|39995202, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995202, gi|....

Description E-value Query
Range
Subject
Range
HDB2_METJA, HDRB... - CoB--CoM heterodisulfide reductase subunit B 2 OS=Methanocaldococcus jannaschii GN=hdrB2 PE=3 SV=1, ...
HDRB2_METJA - CoB--CoM heterodisulfide reductase subunit B 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 /...
261.0 [0..8] [295..1]
gi|45047584, gi|... - gi|45358718|ref|NP_988275.1| heterosulfide reductase, subunit B1 [Methanococcus maripaludis S2], gi|...
260.0 [0..5] [295..3]
gi|45510798, gi|... - gi|75909853|ref|YP_324149.1| succinate dehydrogenase subunit C [Anabaena variabilis ATCC 29413], gi|...
251.0 [0..9] [295..7]
gi|17230833, gi|... - gi|17230833|ref|NP_487381.1| heterodisulfide reductase, subunit B [Nostoc sp. PCC 7120], gi|17132436...
gi|25332391 - pir||AF2223 heterodisulfide reductase, chain B [imported] - Nostoc sp. (strain PCC 7120)
250.0 [0..9] [294..7]
HDRB_METTM - CoB--CoM heterodisulfide reductase subunit B OS=Methanothermobacter marburgensis (strain DSM 2133 / ...
gi|7451871, gi|7... - pir||S78509 heterodisulfide reductase (EC 1.97.1.-) chain B - Methanobacterium thermoautotrophicum (...
247.0 [0..8] [293..1]
gi|84489812, gi|... - gi|84489812|ref|YP_448044.1| HdrB1 [Methanosphaera stadtmanae DSM 3091], gi|84373131|gb|ABC57401.1| ...
247.0 [0..8] [293..1]
gi|48841083, gi|... - gi|73668183|ref|YP_304198.1| CoB--CoM heterodisulfide reductase subunit B [Methanosarcina barkeri st...
246.0 [0..7] [292..1]
HDRB_METAC - CoB--CoM heterodisulfide reductase 1 subunit B OS=Methanosarcina acetivorans (strain ATCC 35395 / DS...
HDRB_METAC - CoB--CoM heterodisulfide reductase 1 subunit B OS=Methanosarcina acetivorans GN=hdrB PE=3 SV=1
245.0 [0..7] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAKNLLNY SYYPGCSLHA SAKEYDESTR GLFRALKIGL HEVPDWLCCG ATPAHNVDEL  60
   61 LSLSLCAKNL SLAEEVGGDL AVACAACF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.638272
Match: PF02754.7
Description: No description for PF02754.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLKVTQHRL ADNEEKRRQV EYAIDGKVSF DNKVKHLLEI LAKDFGLDRL TAAVRKPLEG  60
   61 LKVACYYGCL LTRPPEVPEL DDCEAPTIME RVIGAAGAET VTWS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [193-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRMECCGANF TLSRPGVVLK LSGDILASAK AAGANCILVA CPLCHGNLDI RQKEIEEASG  60
   61 QWFGMPVFYM TQLLALAVGV APAKLGFDSM IVNPLPLLKE KGLV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.823909
Match: PF02754.7
Description: No description for PF02754.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle