YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995140, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995140, gi|....

Description	E-value	Query Range	Subject Range
gi\|48847105, gi\|... - gi\|78224719\|ref\|YP_386466.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Geoba...	268.0	[0..1]	[259..1]
gi\|71836381, gi\|... - gi\|71836381\|ref\|ZP_00676150.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pel...	268.0	[0..2]	[259..27]
NIT2_XENTR - Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1	252.0	[0..1]	[259..1]
gi\|77543813, gi\|... - gi\|77917730\|ref\|YP_355545.1\| putative amidase [Pelobacter carbinolicus DSM 2380], gi\|77543813\|gb\|ABA...	252.0	[0..2]	[259..9]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	249.0	[0..5]	[259..432]
NIT2 - nitrilase family, member 2	248.0	[0..1]	[259..1]
NIT2B_XENLA - Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1	247.0	[0..1]	[259..1]
NIT2_RAT - Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1	247.0	[0..1]	[259..1]
gi\|77686045, gi\|... - gi\|77686045\|ref\|ZP_00801418.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Alk...	246.0	[0..5]	[259..4]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTVKAGAV QFTVRLGDID ANVAYVQKAL RRLASQGCRL AVLPEMWSTG YAYKELNELA  60
   61 KRTPEVVAEL GRLSRELEMV IVGSMPEPHG EKVFNTAYVL DRGELLGSYR KIHLFSLMGE 120
  121 DRSLDGGDRW LVVDTHVGRL GVFICYDLRF PELARRLAVE GAEIIVVPAE WPKPREEHWR 180
  181 ALLRARAIEN QLFVVAANCC GVQGKLDFFG SSLIIDPKGE LLAEGGYDPC EPMATLDFQV 240
  241 METWRDQIPC FADRRPSCY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.221849
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: