YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39981901, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39981901, gi|....

Description	E-value	Query Range	Subject Range
gi\|25520839 - pir\|\|F98270 tolQ protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi\|15159594, gi\|... - gi\|15891231\|ref\|NP_356903.1\| hypothetical protein AGR_L_2236 [Agrobacterium tumefaciens str. C58], g...	198.0	[0..2]	[225..63]
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	196.0	[0..1]	[224..38]
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	195.0	[0..1]	[221..10]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	195.0	[0..2]	[223..13]
gi\|192289718, gi... - gi\|192289718\|ref\|YP_001990323.1\| protein TolQ [Rhodopseudomonas palustris TIE-1], gi\|192283467\|gb\|AC... TolQ - TolQ TolQ protein, inner membrane protein, tolerance to group A colicins 1219157:1219867 forward MW:...	195.0	[0..1]	[225..20]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	194.0	[0..2]	[223..13]
gi\|86571960, gi\|... - gi\|86748932\|ref\|YP_485428.1\| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris HaA2], gi\|865...	194.0	[0..1]	[225..21]
gi\|49081978 - gi\|49081978\|gb\|AAT50389.1\| PA0969 [synthetic construct]	193.0	[0..2]	[223..13]
gi\|116048894, gi... - gi\|32040976\|ref\|ZP_00138559.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa UCBPP-... gi\|254245252, gi... - gi\|84322555\|ref\|ZP_00970640.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa 2192],... gi\|152986028, gi... - gi\|94417932\|ref\|ZP_01297748.1\| hypothetical protein PaerP_01000080 [Pseudomonas aeruginosa PA7], gi\|... TOLQ_PSEAE - Protein tolQ OS=Pseudomonas aeruginosa GN=tolQ PE=3 SV=1 TOLQ_PSEAE - Protein TolQ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=tolQ... gi\|107100425 - gi\|107100425\|ref\|ZP_01364343.1\| hypothetical protein PaerPA_01001450 [Pseudomonas aeruginosa PACS2] gi\|218773288, gi... - gi\|218893060\|ref\|YP_002441929.1\| TolQ protein [Pseudomonas aeruginosa LESB58], gi\|218773288\|emb\|CAW2...	193.0	[0..2]	[223..13]
gi\|94426764, gi\|... - gi\|94501017\|ref\|ZP_01307541.1\| Biopolymer transport protein [Oceanobacter sp. RED65], gi\|94426764\|gb...	193.0	[0..2]	[225..9]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFAGTGLV VKLVLVVLIF FSVVSWAIIF FKLLQINRAN GESDRFLDFF WKTKRFDAIS  60
   61 SQLDRFGNSP LSVLFNEGYA ELRRLLDKGG EQRDEPGVVS TDLGGIDNIA RALRRATTSE 120
  121 ITRLEKYVTF LATTGSTAPF IGLFGTVWGI MNAFKGIGET GSASLAVVAP GIAEALIATA 180
  181 IGLVAAIPAV MAYNHFQHKI KVLIASMDNF STEFLNIVQR TFAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.21467
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits