YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995138, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995138, gi|....

Description	E-value	Query Range	Subject Range
gi\|37222146 - gi\|37222146\|gb\|AAP49339.1\| ExbD [uncultured bacterium]	164.0	[0..1]	[136..1]
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	164.0	[0..1]	[139..1]
gi\|118652964, gi... - gi\|118709792\|ref\|ZP_01562373.1\| Biopolymer transport protein ExbD/TolR [Burkholderia cenocepacia MC0... gi\|67095370, gi\|... - gi\|67657102\|ref\|ZP_00454482.1\| Biopolymer transport protein ExbD/TolR [Burkholderia cenocepacia AU 1... gi\|67101780, gi\|... - gi\|67664669\|ref\|ZP_00461941.1\| Biopolymer transport protein ExbD/TolR [Burkholderia cenocepacia HI24...	162.0	[0..1]	[138..1]
gi\|23015567 - gi\|23015567\|ref\|ZP_00055339.1\| COG0848: Biopolymer transport protein [Magnetospirillum magnetotactic...	161.0	[0..3]	[134..8]
gi\|72609570, gi\|... - gi\|74017685\|ref\|ZP_00688308.1\| Biopolymer transport protein ExbD/TolR [Burkholderia ambifaria AMMD],...	161.0	[0..1]	[138..1]
gi\|170733561, gi... - gi\|170733561\|ref\|YP_001765508.1\| biopolymer transport protein ExbD/TolR [Burkholderia cenocepacia MC... gi\|84355174, gi\|... - gi\|84355174\|ref\|ZP_00980063.1\| COG0848: Biopolymer transport protein [Burkholderia cenocepacia PC184... gi\|206560653, gi... - gi\|206560653\|ref\|YP_002231418.1\| putative biopolymer transport protein [Burkholderia cenocepacia J23...	161.0	[0..1]	[138..3]
gi\|82947153, gi\|... - gi\|83312312\|ref\|YP_422576.1\| biopolymer transport protein [Magnetospirillum magneticum AMB-1], gi\|82...	161.0	[0..4]	[134..8]
gi\|167897052 - gi\|167897052\|ref\|ZP_02484454.1\| transport energizing protein, ExbD/TolR family [Burkholderia pseudom... gi\|167913729 - gi\|167913729\|ref\|ZP_02500820.1\| transport energizing protein, ExbD/TolR family [Burkholderia pseudom... gi\|82532877 - gi\|82532877\|ref\|ZP_00892085.1\| COG0848: Biopolymer transport protein [Burkholderia pseudomallei 1106... gi\|167826985 - gi\|167826985\|ref\|ZP_02458456.1\| transport energizing protein, ExbD/TolR family [Burkholderia pseudom... gi\|82537794 - gi\|82537794\|ref\|ZP_00896790.1\| hypothetical protein Bpse110_02001056 [Burkholderia pseudomallei 1106... gi\|83678919, gi\|... - gi\|83678919\|ref\|ZP_00940639.1\| COG0848: Biopolymer transport protein [Burkholderia pseudomallei 406e... gi\|67752863, gi\|... - gi\|67752863\|ref\|ZP_00491820.1\| COG0848: Biopolymer transport protein [Burkholderia pseudomallei Past...	160.0	[0..1]	[138..1]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	160.0	[0..3]	[137..8]
gi\|77967743, gi\|... - gi\|78066998\|ref\|YP_369767.1\| biopolymer transport protein ExbD/TolR [Burkholderia sp. 383], gi\|77967...	160.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVGSRNSGD RGTMSQINVT PLVDVMLVLL IIFMVTAPMM QQGVQVNLPK AETKAMTAQD  60
   61 EAVVVSIDRA GKVFVNSTEV ASGDLTAKLT AMVANRAKKE VFLKADRDVP YGQVVKTMAE 120
  121 IKGAGIERLG MVTEPAPGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.69897
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.860	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits