YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995137, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995137, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195977, gi\|... - gi\|78224722\|ref\|YP_386469.1\| TonB-like [Geobacter metallireducens GS-15], gi\|78195977\|gb\|ABB33744.1\|...	363.0	[0..1]	[226..21]
gi\|71743214, gi\|... - gi\|71836384\|ref\|ZP_00676153.1\| TonB, C-terminal [Pelobacter propionicus DSM 2379], gi\|71743214\|gb\|EA...	192.0	[0..26]	[223..47]
gi\|77920566, gi\|... - gi\|77920566\|ref\|YP_358381.1\| putative TonB transport protein [Pelobacter carbinolicus DSM 2380], gi\|...	70.0	[0..3]	[199..25]
gi\|68178997, gi\|... - gi\|95929960\|ref\|ZP_01312700.1\| TonB-like [Desulfuromonas acetoxidans DSM 684], gi\|95133929\|gb\|EAT155...	65.0	[0..1]	[206..28]
gi\|67915560, gi\|... - gi\|67938107\|ref\|ZP_00530636.1\| conserved hypothetical protein [Chlorobium phaeobacteroides BS1], gi\|...	55.0	[0..49]	[223..100]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLALAALA LVAQFNVPRY TEAPVYYVDV VNLPVASPRA GSPTVGGAPP ELPPPASQAM  60
   61 ATPRLTPHTP AAVGKKSPTA ADTGKEFEDR LSALQRNVDE RRQEAALDAL RRKVNGSGRA 120
  121 EPAGMPSATG TQAGSDYAAY IQSRLRDAFR YTIAHQAKTP EVVIRLTIDP RGRVTRQRIE 180
  181 RSTGDRIFEE SVMKAIAMAE KTFAPPPSGG EFETGFIFRP EGVGKR

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Detection Method:	FFAS03
Confidence:	3.65
Match:	2grxC
Description:	No description for 2grxC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	0.108124501033103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: