YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4062520, gi\|1...
Organism:	Escherichia coli
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4062520, gi|1....

Description	E-value	Query Range	Subject Range
gi\|194711785, gi... - gi\|194736283\|ref\|YP_002114065.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar S... gi\|194406871, gi... - gi\|194448567\|ref\|YP_002045067.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar H... gi\|197241370, gi... - gi\|197263115\|ref\|ZP_03163189.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|197248455, gi... - gi\|197248455\|ref\|YP_002145935.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar A... gi\|168264745, gi... - gi\|205346842\|gb\|EDZ33473.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Hadar ... gi\|205337125, gi... - gi\|205337125\|gb\|EDZ23889.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Heidel... lcl\|NC_016856.1_... - [gene=ymbA] [protein=putative outer membrane protein] [protein_id=YP_005236797.1] [location=1115167.... gi\|194404540, gi... - gi\|194445877\|ref\|YP_002040268.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar N... gi\|168467504, gi... - gi\|195630028\|gb\|EDX48680.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Newpor... gi\|161614741, gi... - gi\|161614741\|ref\|YP_001588706.1\| hypothetical protein SPAB_02493 [Salmonella enterica subsp. enteric... gi\|168237117, gi... - gi\|197289767\|gb\|EDY29128.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Schwar... gi\|167993437, gi... - gi\|205328520\|gb\|EDZ15284.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|25350775, gi\|... - gi\|25350775\|pir\|\|AD0626 probable lipoprotein STY1086 [imported] - Salmonella enterica subsp. enteric... gi\|224584428, gi... - gi\|224584428\|ref\|YP_002638226.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|16759946 - gi\|16759946\|ref\|NP_455563.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|213646603 - gi\|213646603\|ref\|ZP_03376656.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213611227 - gi\|213611227\|ref\|ZP_03370053.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|16419580, gi\|... - gi\|16764424\|ref\|NP_460039.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164195... gi\|214001675 - gi\|214001675\|ref\|ZP_03412410.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|29142282, gi\|... - gi\|29142282\|ref\|NP_805624.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|213857694 - gi\|213857694\|ref\|ZP_03384665.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213161912 - gi\|213161912\|ref\|ZP_03347622.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|207856410, gi... - gi\|207856410\|ref\|YP_002243061.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|213425906 - gi\|213425906\|ref\|ZP_03358656.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213417135 - gi\|213417135\|ref\|ZP_03350279.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|200389299, gi... - gi\|200389299\|ref\|ZP_03215910.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Vi... gi\|197094338, gi... - gi\|197362861\|ref\|YP_002142498.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|205272001, gi... - gi\|205352220\|ref\|YP_002226021.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|204929851, gi... - gi\|204929851\|ref\|ZP_03220872.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ja... gi\|238911112 - gi\|238911112\|ref\|ZP_04654949.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|56128195, gi\|... - gi\|56413938\|ref\|YP_151013.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat...	196.0	[0..1]	[187..1]
gi\|62127220, gi\|... - gi\|62179587\|ref\|YP_216004.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	195.0	[0..1]	[187..1]
gi\|209918204, gi... - gi\|209918204\|ref\|YP_002292288.1\| hypothetical protein ECSE_1013 [Escherichia coli SE11], gi\|20991146... gi\|75226633 - gi\|75226633\|ref\|ZP_00713636.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c...	193.0	[0..1]	[187..1]
gi\|193064667, gi... - gi\|75257330\|ref\|ZP_00728846.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c...	192.0	[0..1]	[187..1]
gi\|187427223, gi... - gi\|75178234\|ref\|ZP_00698288.1\| COG3009: Uncharacterized protein conserved in bacteria [Shigella boyd...	191.0	[0..1]	[187..1]
gi\|194435233, gi... - gi\|83568924\|ref\|ZP_00920392.1\| COG3009: Uncharacterized protein conserved in bacteria [Shigella dyse...	191.0	[0..1]	[187..1]
gi\|191172142, gi... - gi\|75241020\|ref\|ZP_00724909.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|117623163, gi... - gi\|117623163\|ref\|YP_852076.1\| hypothetical protein APECO1_58 [Escherichia coli APEC O1], gi\|11551228... gi\|226898275, gi... - gi\|237707065\|ref\|ZP_04537546.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|215264142, gi... - gi\|215486070\|ref\|YP_002328501.1\| hypothetical protein E2348C_0938 [Escherichia coli O127:H6 str. E23... gi\|91071621, gi\|... - gi\|91210047\|ref\|YP_540033.1\| hypothetical protein UTI89_C1017 [Escherichia coli UTI89], gi\|91071621\|... gi\|110641141, gi... - gi\|110641141\|ref\|YP_668871.1\| hypothetical protein ECP_0957 [Escherichia coli 536], gi\|110342733\|gb\|...	191.0	[0..1]	[187..1]
gi\|26246973, gi\|... - gi\|26246973\|ref\|NP_753013.1\| hypothetical protein c1088 [Escherichia coli CFT073], gi\|26107373\|gb\|AA...	187.0	[0..1]	[187..1]
gi\|85674798, gi\|... - gi\|89107802\|ref\|AP_001582.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YMBA_ECOLI - Hypothetical protein ymbA - Escherichia coli YMBA_SHIFL - Hypothetical protein ymbA - Shigella flexneri gi\|253972967, gi... - gi\|254161066\|ref\|YP_003044174.1\| hypothetical protein ECB_00956 [Escherichia coli B str. REL606], gi... gi\|254287874, gi... - gi\|254287874\|ref\|YP_003053622.1\| hypothetical protein ECD_00956 [Escherichia coli BL21(DE3)], gi\|253... gi\|16128919, gi\|... - gi\|1787185\|gb\|AAC74038.1\| conserved protein [Escherichia coli K12], gi\|16128919\|ref\|NP_415472.1\| hyp... gi\|251784494, gi... - gi\|251784494\|ref\|YP_002998798.1\| hypothetical protein B21_00963 [Escherichia coli BL21], gi\|24237676...	180.0	[0..7]	[187..2]
gi\|74311509, gi\|... - gi\|74311509\|ref\|YP_309928.1\| hypothetical protein SSON_0956 [Shigella sonnei Ss046], gi\|73854986\|gb\|... gi\|218351159, gi... - gi\|218694427\|ref\|YP_002402094.1\| hypothetical protein EC55989_1001 [Escherichia coli 55989], gi\|2183... gi\|191169750, gi... - gi\|191169750\|ref\|ZP_03031411.1\| putative lipoprotein [Escherichia coli B7A], gi\|190900210\|gb\|EDV6009...	180.0	[0..7]	[187..2]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWLVTIAA LWLAGCSSGE INKNYYQLPV VQSGTQSTAS QGNRLLWVEQ VTVPDYLAGN  60
   61 GVVYQTSDVK YVIANNNLWA SPLDQQLRNT LVANLSTQLP GWVVASQPLG SAQDTLNVTV 120
  121 TEFNGRYDGK VIVSGEWLLN HQGQLIKRPF RLEGVQTQDG YDEMVKVLAG VWSQEAASIA 180
  181 QEIKRLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.045757
Match:	2iqiA
Description:	No description for 2iqiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits