YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29655348, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29655348, gi|....

Description	E-value	Query Range	Subject Range
gi\|84375793, gi\|... - gi\|84393584\|ref\|ZP_00992337.1\| chorismate mutase/prephenate dehydrogenase [Vibrio splendidus 12B01],...	107.0	[0..40]	[123..4]
gi\|86148428, gi\|... - gi\|86148428\|ref\|ZP_01066719.1\| chorismate mutase/prephenate dehydrogenase [Vibrio sp. MED222], gi\|85...	107.0	[0..40]	[123..4]
gi\|91227656, gi\|... - gi\|91227656\|ref\|ZP_01261933.1\| chorismate mutase/prephenate dehydrogenase [Vibrio alginolyticus 12G0...	105.0	[0..40]	[123..4]
gi\|71846492, gi\|... - gi\|71906871\|ref\|YP_284458.1\| prephenate dehydratase [Dechloromonas aromatica RCB], gi\|71846492\|gb\|AA...	104.0	[0..33]	[124..1]
gi\|254230250, gi... - gi\|75854869\|ref\|ZP_00762539.1\| COG0287: Prephenate dehydrogenase [Vibrio sp. Ex25], gi\|254230250\|ref...	104.0	[0..40]	[123..4]
gi\|28897321, gi\|... - gi\|28897321\|ref\|NP_796926.1\| bifunctional chorismate mutase/prephenate dehydrogenase [Vibrio parahae... gi\|28805530 - gi\|28805530\|dbj\|BAC58810.1\| chorismate mutase/prephenate dehydrogenase [Vibrio parahaemolyticus RIMD...	104.0	[0..40]	[123..4]
gi\|84361153, gi\|... - gi\|84361153\|ref\|ZP_00985833.1\| COG0077: Prephenate dehydratase [Burkholderia dolosa AUO158], gi\|2542...	104.0	[0..33]	[126..1]
gi\|72611310, gi\|... - gi\|74015881\|ref\|ZP_00686508.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Burkholder... gi\|172059978, gi... - gi\|172059978\|ref\|YP_001807630.1\| chorismate mutase [Burkholderia ambifaria MC40-6], gi\|171992495\|gb\|...	103.0	[0..33]	[126..1]
gi\|67092908, gi\|... - gi\|67659529\|ref\|ZP_00456890.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Burkholder...	103.0	[0..33]	[126..1]
gi\|67546806, gi\|... - gi\|67546806\|ref\|ZP_00424716.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Burkholder...	103.0	[0..33]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQCARFLL LACVLVPILS ASAASMPRTK QLILAKRCDT LDCVRDRIDL IDQKIVLLIK  60
   61 DRLMYVQRAA ELKKGKKSIH DQVREDKILA SVSQQAEKAG YSGEIVKAVF KTILHQSNNY 120
  121 EKRFHHYQSQ KLNTRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	2h9cA
Description:	No description for 2h9cA was found.

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.92706714868161	bayes_pls_golite062009
prephenate dehydratase activity	2.47223657985094	bayes_pls_golite062009
catalytic activity	1.46550169341481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: