YRC Public Data Repository - Protein Structure Prediction

Protein:	APAH_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APAH_COXBU.

Description	E-value	Query Range	Subject Range
gi\|91084329 - gi\|91084329\|ref\|XP_972528.1\| PREDICTED: similar to Serine/threonine-protein phosphatase alpha-1 isof...	275.0	[0..1]	[253..8525]
gi\|109105418 - gi\|109105418\|ref\|XP_001117941.1\| PREDICTED: similar to protein phosphatase 1, catalytic subunit, alp...	266.0	[0..1]	[253..137]
gi\|114646946 - gi\|114646946\|ref\|XP_001144148.1\| PREDICTED: protein phosphatase 1, catalytic subunit, gamma isoform ...	265.0	[0..1]	[253..72]
gi\|74177455 - gi\|74177455\|dbj\|BAE34608.1\| unnamed protein product [Mus musculus]	264.0	[0..1]	[253..39]
gi\|1535 - gi\|1535\|emb\|CAA30645.1\| unnamed protein product [Oryctolagus cuniculus]	263.0	[0..1]	[253..40]
gi\|542987, gi\|29... - gi\|56790945\|ref\|NP_001008709.1\| protein phosphatase 1, catalytic subunit, alpha isoform 3 [Homo sapi...	263.0	[0..1]	[253..51]
gi\|134108372, gi... - gi\|50259822\|gb\|EAL22490.1\| hypothetical protein CNBB3690 [Cryptococcus neoformans var. neoformans B-... gi\|57223783, gi\|... - gi\|58263446\|ref\|XP_569133.1\| protein phosphatase type 1 [Cryptococcus neoformans var. neoformans JEC...	263.0	[0..2]	[253..41]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDARAINSRE KADLKYPRNT YIIGDVQGCY RELQELLELI QFDSTKDRLG FVGDLVNRGP  60
   61 NSLEVLRFLK SLSSPLIVLG NHDLYLLILG YGLMPEDSYE HTLHAVLQAP DKLELLEWLR 120
  121 HSPLIRYEKS LSAVLVHAGL PPQWNIKESI LHAEEISTAL KGPHYLAFLK NLFGNEPSQW 180
  181 KEDLEGQDRL RYICNAFTRM RFCDAKGHLD LESEGKTNQA PSRFRPWFEW RNPQEDNVDI 240
  241 VFGHWAALNG QSSAPHTHAL DTGCAWGYKL TAINLKTKER FSVPCQSALR M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	2dfjA
Description:	No description for 2dfjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits