YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542188, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542188, gi|....

Description	E-value	Query Range	Subject Range
gi\|46398651, gi\|... - gi\|46398651\|gb\|AAS92011.1\| IcmL protein [Legionella pneumophila], gi\|46398633\|gb\|AAS92002.1\| IcmL pr...	287.0	[0..6]	[205..4]
gi\|52840694, gi\|... - gi\|52840694\|ref\|YP_094493.1\| IcmL (DotI) [Legionella pneumophila subsp. pneumophila str. Philadelphi... gi\|22080758 - gi\|22080758\|emb\|CAD43145.1\| DotI protein [Legionella pneumophila serogroup 6] gi\|46398643, gi\|... - pir\|\|T18332 icmL protein - Legionella pneumophila, gi\|46398655\|gb\|AAS92013.1\| IcmL protein [Legionel... gi\|54296484, gi\|... - gi\|54296484\|ref\|YP_122853.1\| hypothetical protein lpp0515 [Legionella pneumophila str. Paris], gi\|53... gi\|53753274, gi\|... - gi\|54293442\|ref\|YP_125857.1\| hypothetical protein lpl0491 [Legionella pneumophila str. Lens], gi\|537... gi\|148282707, gi... - gi\|148360934\|ref\|YP_001252141.1\| IcmL (DotI) [Legionella pneumophila str. Corby], gi\|148282707\|gb\|AB...	287.0	[0..6]	[205..4]
gi\|18693266 - gi\|18693266\|gb\|AAL78307.1\|AF288617_4 DotI [Legionella longbeachae]	271.0	[0..6]	[213..4]
gi\|212212033, gi... - gi\|212212033\|ref\|YP_002302969.1\| IcmL [Coxiella burnetii CbuG_Q212], gi\|212010443\|gb\|ACJ17824.1\| Icm... gi\|212013590, gi... - gi\|212219328\|ref\|YP_002306115.1\| IcmL [Coxiella burnetii CbuK_Q154], gi\|212013590\|gb\|ACJ20970.1\| Icm... gi\|165916891, gi... - gi\|165919476\|ref\|ZP_02219496.1\| IcmL protein [Coxiella burnetii RSA 334], gi\|165916891\|gb\|EDR35495.1... gi\|153207052, gi... - gi\|153207052\|ref\|ZP_01945849.1\| IcmL protein [Coxiella burnetii 'MSU Goat Q177'], gi\|120576893\|gb\|EA... gi\|29654920, gi\|... - gi\|29654920\|ref\|NP_820612.1\| IcmL [Coxiella burnetii RSA 493], gi\|29542189\|gb\|AAO91126.1\| IcmL [Coxi... gi\|94491746, gi\|... - gi\|94491746\|ref\|ZP_01298956.1\| hypothetical protein CburD_01001140 [Coxiella burnetii Dugway 7E9-12]... gi\|161761680, gi... - gi\|95928056\|ref\|ZP_01310807.1\| hypothetical protein CburR_01000220 [Coxiella burnetii RSA 331], gi\|1...	254.0	[0..4]	[206..2]
gi\|161867976, gi... - gi\|161867976\|ref\|YP_001598157.1\| hypothetical protein pOU7519_114 [Salmonella enterica subsp. enteri... gi\|194358437, gi... - gi\|194446993\|ref\|YP_002039140.1\| TraM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM... gi\|4512510, gi\|9... - gi\|9507513\|ref\|NP_052520.1\| hypothetical protein ColIb-P9_p074 [Plasmid ColIb-P9], gi\|4512510\|dbj\|BA... gi\|70610233 - gi\|70610233\|gb\|AAZ05380.1\| TraM [Salmonella enterica] gi\|45758143, gi\|... - gi\|60115585\|ref\|YP_209376.1\| TraM-like protein [Salmonella enterica subsp. enterica serovar Cholerae... gi\|193065836, gi... - gi\|75256099\|ref\|ZP_00727803.1\| hypothetical protein EcolE2_01003933 [Escherichia coli E22], gi\|19306...	241.0	[0..24]	[213..42]
gi\|194447285, gi... - gi\|194447285\|ref\|YP_002043931.1\| TraM [Salmonella enterica subsp. enterica serovar Heidelberg str. S... gi\|32470232, gi\|... - gi\|32470232\|ref\|NP_863456.1\| hypothetical protein R64_p101 [Salmonella typhimurium], gi\|20521600\|dbj... gi\|4903116 - gi\|4903116\|dbj\|BAA78001.1\| traM [Plasmid R64] gi\|32470232\|ref\|... - traM [Salmonella typhimurium], hypothetical protein R64_p101 [Salmonella typhimurium] gi\|189360462, gi... - gi\|189360462\|gb\|EDU78881.1\| TraM [Escherichia coli O157:H7 str. EC4486], gi\|168770652\|ref\|ZP_0279565... gi\|189354662, gi... - gi\|189354662\|gb\|EDU73081.1\| TraM [Escherichia coli O157:H7 str. EC4401], gi\|168758552\|ref\|ZP_0278355...	240.0	[0..24]	[213..42]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTSEGLKL VILRNAFYRD NYRRAIIVLL FALIINCGLA FMIFYKWMYP PQPEYFATTA  60
   61 DGRIIMLHPL SDPVLPDDFV LQWSTDAVRK AFSLDYEHWR EQLQEASNNF TPDGWKWFLN 120
  121 SLKSTNNLKT LVDLKMVSNA TVTGAPTVVR KEVVGGHFAW NIKMPLLVTY TSEGHTINMP 180
  181 MEVTLIVVRM PTQDYPQRIA INNFLAQTVT PNAVDNSV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2bhmA
Description:	Crystal structure of VirB8 from Brucella suis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits