YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654875, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654875, gi|....

Description	E-value	Query Range	Subject Range
gi\|15613878, gi\|... - gi\|15613878\|ref\|NP_242181.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus halodurans... gi\|25345883 - pir\|\|C83814 Na+/H+ antiporter BH1315 [imported] - Bacillus halodurans (strain C-125)	130.0	[0..1]	[115..41]
gi\|94491777, gi\|... - gi\|94491777\|ref\|ZP_01298987.1\| hypothetical protein CburD_01001172 [Coxiella burnetii Dugway 7E9-12]...	129.0	[0..1]	[115..1]
gi\|68189865, gi\|... - gi\|69279609\|ref\|ZP_00614415.1\| Protein of unknown function DUF68 [Mesorhizobium sp. BNC1], gi\|681898...	129.0	[0..5]	[114..47]
gi\|23099450, gi\|... - gi\|23099450\|ref\|NP_692916.1\| putative monovalent cation/H+ antiporter subunit E [Oceanobacillus ihey...	128.0	[0..1]	[114..41]
gi\|145206230, gi... - gi\|71481524\|ref\|ZP_00661230.1\| Protein of unknown function DUF68 [Prosthecochloris vibrioformis DSM ...	127.0	[0..6]	[113..48]
gi\|91711226, gi\|... - gi\|91772211\|ref\|YP_564903.1\| putative monovalent cation/H+ antiporter subunit E [Methanococcoides bu...	126.0	[0..9]	[114..58]
gi\|69142386, gi\|... - gi\|92116587\|ref\|YP_576316.1\| putative monovalent cation/H+ antiporter subunit E [Nitrobacter hamburg...	126.0	[0..1]	[114..47]
gi\|16415003, gi\|... - pir\|\|AD1742 protein involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lin... gi\|16801543 - gi\|16801543\|ref\|NP_471811.1\| putative monovalent cation/H+ antiporter subunit E [Listeria innocua Cl...	125.0	[0..1]	[114..41]
gi\|153175614, gi... - gi\|254829553\|ref\|ZP_05234240.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254938372, gi... - gi\|254938372\|ref\|ZP_05270069.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254933446, gi... - gi\|254933446\|ref\|ZP_05266805.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|226224934, gi... - gi\|226224934\|ref\|YP_002759041.1\| Na(+)/H(+) antiporter subunit E (Multiple resistance and pH homeost... gi\|254826357 - gi\|254826357\|ref\|ZP_05231358.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254854467 - gi\|254854467\|ref\|ZP_05243815.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254880414 - gi\|254880414\|ref\|ZP_05253124.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254992238 - gi\|254992238\|ref\|ZP_05274428.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|255027067 - gi\|255027067\|ref\|ZP_05299053.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|255522395 - gi\|255522395\|ref\|ZP_05389632.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|47095861, gi\|... - gi\|47095861\|ref\|ZP_00233465.1\| Na+/H+ antiporter component E, putative [Listeria monocytogenes str. ... gi\|47018620, gi\|... - gi\|47092966\|ref\|ZP_00230746.1\| Na+/H+ antiporter component E, putative [Listeria monocytogenes str. ... gi\|16411870, gi\|... - pir\|\|AF1372 proteins involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lm... gi\|224503729 - gi\|224503729\|ref\|ZP_03672036.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|224500598 - gi\|224500598\|ref\|ZP_03668947.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|153186625, gi... - gi\|254901156\|ref\|ZP_05261080.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|254831194, gi... - gi\|254831194\|ref\|ZP_05235849.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|46908555, gi\|... - gi\|46908555\|ref\|YP_014944.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocytoge... gi\|254914057, gi... - gi\|254914057\|ref\|ZP_05264069.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocyt... gi\|16804420 - gi\|16804420\|ref\|NP_465905.1\| putative monovalent cation/H+ antiporter subunit E [Listeria monocytoge... gi\|153168463, gi... - gi\|153168463\|ref\|ZP_01928306.1\| hypothetical protein LMHG_01327 [Listeria monocytogenes FSL N1-017],...	125.0	[0..1]	[114..41]
gi\|90418823, gi\|... - gi\|90418823\|ref\|ZP_01226734.1\| Na+/H+ antiporter, MnhE subunit [Aurantimonas sp. SI85-9A1], gi\|90336... gi\|90418823, gi\|... - gi\|90418823\|ref\|ZP_01226734.1\| Na+/H+ antiporter, MnhE subunit [Aurantimonas sp. SI85-9A1], gi\|90336...	125.0	[0..5]	[114..47]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRILRYPYK AYLIIKFILF LLWEILIANF RVAHEVLTPH FRARPGVLAI PLDCRTPVEI  60
   61 TLFANIISLT PGTLTLDISE DQKTLYVHAM FIDDVDQLKA EIKHKFEKPI MEILA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.657577
Match:	PF01899.7
Description:	No description for PF01899.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.980	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits