YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654866, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654866, gi|....

Description	E-value	Query Range	Subject Range
gi\|23015567 - gi\|23015567\|ref\|ZP_00055339.1\| COG0848: Biopolymer transport protein [Magnetospirillum magnetotactic...	153.0	[0..2]	[143..15]
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	152.0	[0..3]	[142..12]
gi\|82947153, gi\|... - gi\|83312312\|ref\|YP_422576.1\| biopolymer transport protein [Magnetospirillum magneticum AMB-1], gi\|82...	152.0	[0..2]	[143..14]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	152.0	[0..2]	[140..15]
gi\|49076264 - gi\|49076264\|gb\|AAT49541.1\| PA0970 [synthetic construct]	149.0	[0..2]	[137..7]
gi\|37222146 - gi\|37222146\|gb\|AAP49339.1\| ExbD [uncultured bacterium]	148.0	[0..4]	[137..12]
gi\|120606829, gi... - gi\|121594749\|ref\|YP_986645.1\| biopolymer transport protein ExbD/TolR [Acidovorax sp. JS42], gi\|12060...	148.0	[0..4]	[138..11]
TOLR_PSEAE - Protein TolR OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=tolR... TOLR_PSEAE - Protein tolR OS=Pseudomonas aeruginosa GN=tolR PE=3 SV=1 gi\|218893059, gi... - gi\|218893059\|ref\|YP_002441928.1\| TolR protein [Pseudomonas aeruginosa LESB58], gi\|218773287\|emb\|CAW2... gi\|116048895, gi... - gi\|116048895\|ref\|YP_792304.1\| TolR protein [Pseudomonas aeruginosa UCBPP-PA14], gi\|115584116\|gb\|ABJ1... gi\|254245253, gi... - gi\|254245253\|ref\|ZP_04938575.1\| TolR protein [Pseudomonas aeruginosa 2192], gi\|194556238\|ref\|YP_0020... gi\|194550303, gi... - gi\|254239318\|ref\|ZP_04932641.1\| TolR protein [Pseudomonas aeruginosa C3719], gi\|194550303\|ref\|YP_002... gi\|152986471, gi... - gi\|152986471\|ref\|YP_001349887.1\| TolR protein [Pseudomonas aeruginosa PA7], gi\|150961629\|gb\|ABR83654...	147.0	[0..2]	[137..7]
gi\|227835106, gi... - gi\|227887710\|ref\|ZP_04005515.1\| TolR protein [Escherichia coli 83972], gi\|227835106\|gb\|EEJ45572.1\| T... gi\|237706249, gi... - gi\|237706249\|ref\|ZP_04536730.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia sp.... gi\|238902120, gi... - gi\|238902120\|ref\|YP_002927916.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|251786286, gi... - gi\|251786286\|ref\|YP_003000590.1\| hypothetical protein B21_02829 [Escherichia coli BL21], gi\|24237855... gi\|253979013, gi... - gi\|254289706\|ref\|YP_003055454.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|254038175, gi... - gi\|254038175\|ref\|ZP_04872233.1\| biopolymer transporter ExbD [Escherichia sp. 1_1_43], gi\|226839799\|g... gi\|254162956, gi... - gi\|254162956\|ref\|YP_003046064.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|254594360, gi... - gi\|254794960\|ref\|YP_003079797.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|168747489, gi... - gi\|188017823\|gb\|EDU55945.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4113... gi\|115514432, gi... - gi\|117625308\|ref\|YP_854509.1\| biopolymer transport protein ExbD [Escherichia coli APEC O1], gi\|11551... gi\|189369413, gi... - gi\|189369413\|gb\|EDU87829.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4501... gi\|124502181, gi... - gi\|124526077\|ref\|ZP_01698082.1\| Biopolymer transport protein ExbD/TolR [Escherichia coli B], gi\|1245... gi\|168753970, gi... - gi\|189358469\|gb\|EDU76888.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4401... gi\|187770856, gi... - gi\|187770856\|gb\|EDU34700.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4196... gi\|189363760, gi... - gi\|189363760\|gb\|EDU82179.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4486... gi\|91212417, gi\|... - gi\|91212417\|ref\|YP_542403.1\| biopolymer transport protein ExbD [Escherichia coli UTI89], gi\|91073991... gi\|193062022, gi... - gi\|75259949\|ref\|ZP_00731227.1\| COG0848: Biopolymer transport protein [Escherichia coli E22], gi\|1930... gi\|75515199, gi\|... - gi\|75515199\|ref\|ZP_00737383.1\| COG0848: Biopolymer transport protein [Escherichia coli 53638], gi\|18... gi\|192959363, gi... - gi\|75239413\|ref\|ZP_00723384.1\| COG0848: Biopolymer transport protein [Escherichia coli E110019], gi\|... gi\|191172495, gi... - gi\|75240541\|ref\|ZP_00724469.1\| COG0848: Biopolymer transport protein [Escherichia coli F11], gi\|1911... gi\|85675810, gi\|... - gi\|89109777\|ref\|AP_003557.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia coli s... gi\|74313548, gi\|... - gi\|74313548\|ref\|YP_311967.1\| biopolymer transport protein ExbD [Shigella sonnei Ss046], gi\|73857025\|... gi\|82545390, gi\|... - gi\|82545390\|ref\|YP_409337.1\| biopolymer transport protein ExbD [Shigella boydii Sb227], gi\|81246801\|... gi\|83587549, gi\|... - gi\|83587549\|ref\|ZP_00926176.1\| COG0848: Biopolymer transport protein [Escherichia coli 101-1], gi\|19... gi\|75178904, gi\|... - gi\|75178904\|ref\|ZP_00698940.1\| COG0848: Biopolymer transport protein [Shigella boydii BS512], gi\|187... gi\|75212351, gi\|... - gi\|75212351\|ref\|ZP_00712375.1\| COG0848: Biopolymer transport protein [Escherichia coli B171], gi\|194... gi\|191167524, gi... - gi\|75229309\|ref\|ZP_00715868.1\| COG0848: Biopolymer transport protein [Escherichia coli B7A], gi\|1911... gi\|157080838, gi... - gi\|75187826\|ref\|ZP_00701093.1\| COG0848: Biopolymer transport protein [Escherichia coli E24377A], gi\|... EXBD_SHIFL - Biopolymer transport protein ExbD OS=Shigella flexneri GN=exbD PE=3 SV=1 gi\|157068163, gi... - gi\|75196967\|ref\|ZP_00707037.1\| COG0848: Biopolymer transport protein [Escherichia coli HS], gi\|15716... EG10272 - membrane spanning protein in TonB-ExbB-ExbD complex / Uptake of enterochelin; resistance or sensitiv... gi\|24053469, gi\|... - gi\|24114311\|ref\|NP_708821.1\| biopolymer transport protein ExbD [Shigella flexneri 2a str. 301], gi\|2... EXBD_ECOL6 - Biopolymer transport protein ExbD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... EXBD_ECOL6 - Biopolymer transport protein exbD OS=Escherichia coli O6 GN=exbD PE=3 SV=1 gi\|30042616, gi\|... - gi\|30064359\|ref\|NP_838530.1\| biopolymer transport protein ExbD [Shigella flexneri 2a str. 2457T], gi... EXBD_ECO57 - Biopolymer transport protein ExbD OS=Escherichia coli O157:H7 GN=exbD PE=3 SV=1 EG10272 - membrane spanning protein in TonB-ExbB-ExbD complex / Uptake of enterochelin; resistance or sensitiv... gi\|15803549, gi\|... - gi\|15803549\|ref\|NP_289582.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 EDL933], gi... gi\|208821821, gi... - gi\|208821821\|ref\|ZP_03262141.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|208735655, gi... - gi\|208814378\|ref\|ZP_03255707.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|209913739, gi... - gi\|209920480\|ref\|YP_002294564.1\| biopolymer transport protein ExbD [Escherichia coli SE11], gi\|20991... gi\|209160462, gi... - gi\|209399062\|ref\|YP_002272483.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. E... gi\|13363361, gi\|... - gi\|15833143\|ref\|NP_311916.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 str. Sakai]... gi\|217326983, gi... - gi\|217326983\|ref\|ZP_03443066.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. TW... gi\|110643243, gi... - gi\|110643243\|ref\|YP_670973.1\| biopolymer transport protein ExbD [Escherichia coli 536], gi\|110344835... gi\|215488330, gi... - gi\|215488330\|ref\|YP_002330761.1\| biopolymer transport protein ExbD [Escherichia coli O127:H6 str. E2... gi\|110806906, gi... - gi\|110806906\|ref\|YP_690426.1\| biopolymer transport protein ExbD [Shigella flexneri 5 str. 8401], gi\|... gi\|218560079, gi... - gi\|218560079\|ref\|YP_002392992.1\| biopolymer transport protein ExbD [Escherichia coli S88], gi\|218366... gi\|218362346, gi... - gi\|218555578\|ref\|YP_002388491.1\| biopolymer transport protein ExbD [Escherichia coli IAI1], gi\|21836... gi\|168785875, gi... - gi\|189374180\|gb\|EDU92596.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC869]... gi\|168781877, gi... - gi\|189000648\|gb\|EDU69634.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC4076... gi\|170018739, gi... - gi\|170018739\|ref\|YP_001723693.1\| biopolymer transport protein ExbD [Escherichia coli ATCC 8739], gi\|... gi\|168797593, gi... - gi\|189379767\|gb\|EDU98183.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC508]... gi\|170519477, gi... - gi\|170681759\|ref\|YP_001745270.1\| TonB system transport protein ExbD [Escherichia coli SMS-3-5], gi\|1... gi\|170082550, gi... - gi\|170082550\|ref\|YP_001731870.1\| membrane spanning protein in TonB-ExbB-ExbD complex [Escherichia co... gi\|208726442, gi... - gi\|208806641\|ref\|ZP_03248978.1\| TonB system transport protein ExbD [Escherichia coli O157:H7 str. EC... gi\|195937150 - gi\|195937150\|ref\|ZP_03082532.1\| biopolymer transport protein ExbD [Escherichia coli O157:H7 str. EC4... gi\|218353446, gi... - gi\|218696714\|ref\|YP_002404381.1\| biopolymer transport protein ExbD [Escherichia coli 55989], gi\|2183... gi\|218691295, gi... - gi\|218691295\|ref\|YP_002399507.1\| biopolymer transport protein ExbD [Escherichia coli ED1a], gi\|21842... EXBD_ECOLI - Biopolymer transport exbD protein - Escherichia coli gi\|218706633, gi... - gi\|218706633\|ref\|YP_002414152.1\| biopolymer transport protein ExbD [Escherichia coli UMN026], gi\|218... gi\|218371764, gi... - gi\|218701778\|ref\|YP_002409407.1\| biopolymer transport protein ExbD [Escherichia coli IAI39], gi\|2183...	147.0	[0..5]	[141..14]
gi\|33564479, gi\|... - gi\|33594404\|ref\|NP_882048.1\| biopolymer transport protein ExbD/TolR [Bordetella pertussis Tohama I],... gi\|5777377, gi\|1... - gi\|5777377\|emb\|CAB53385.1\| ExbD protein [Bordetella pertussis], pir\|\|T44783 exbD protein [imported] ... gi\|33600967, gi\|... - gi\|33600967\|ref\|NP_888527.1\| biopolymer transport protein ExbD/TolR [Bordetella bronchiseptica RB50]...	147.0	[0..6]	[144..16]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRPLAEIN VVPYIDVMLV LLVIFMITAP LLTQGVNVKL PQANAKALPS HETPIIVSID  60
   61 NHGKYFLNIS SQPAQPISSQ NLINSVTTAL QQAKQNHQQQ EVYVKGDKKV DYGKVVQMMV 120
  121 LLQQAGADNV GLVTYEDPTG QKQKNSL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.136677
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.854	N/A	N/A	c.55.1	Actin-like ATPase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits