YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654865, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654865, gi|....

Description	E-value	Query Range	Subject Range
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	212.0	[0..1]	[221..3]
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	212.0	[0..3]	[221..33]
gi\|212212075, gi... - gi\|212212075\|ref\|YP_002303011.1\| TolQ [Coxiella burnetii CbuG_Q212], gi\|212010485\|gb\|ACJ17866.1\| Tol... gi\|212219286, gi... - gi\|212219286\|ref\|YP_002306073.1\| TolQ [Coxiella burnetii CbuK_Q154], gi\|212013548\|gb\|ACJ20928.1\| Tol... gi\|161830814, gi... - gi\|95926812\|ref\|ZP_01309585.1\| hypothetical protein CburR_01001412 [Coxiella burnetii RSA 331], gi\|1... gi\|154706732, gi... - gi\|94491786\|ref\|ZP_01298996.1\| hypothetical protein CburD_01001181 [Coxiella burnetii Dugway 7E9-12]... gi\|120575777, gi... - gi\|153208745\|ref\|ZP_01946983.1\| TolQ protein [Coxiella burnetii 'MSU Goat Q177'], gi\|120575777\|gb\|EA...	210.0	[0..1]	[237..1]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	210.0	[0..6]	[223..10]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	209.0	[0..6]	[223..10]
gi\|49081978 - gi\|49081978\|gb\|AAT50389.1\| PA0969 [synthetic construct]	208.0	[0..6]	[223..10]
gi\|116048894, gi... - gi\|32040976\|ref\|ZP_00138559.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa UCBPP-... gi\|254245252, gi... - gi\|84322555\|ref\|ZP_00970640.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa 2192],... gi\|152986028, gi... - gi\|94417932\|ref\|ZP_01297748.1\| hypothetical protein PaerP_01000080 [Pseudomonas aeruginosa PA7], gi\|... TOLQ_PSEAE - Protein tolQ OS=Pseudomonas aeruginosa GN=tolQ PE=3 SV=1 TOLQ_PSEAE - Protein TolQ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=tolQ... gi\|107100425 - gi\|107100425\|ref\|ZP_01364343.1\| hypothetical protein PaerPA_01001450 [Pseudomonas aeruginosa PACS2] gi\|218773288, gi... - gi\|218893060\|ref\|YP_002441929.1\| TolQ protein [Pseudomonas aeruginosa LESB58], gi\|218773288\|emb\|CAW2...	208.0	[0..6]	[223..10]
tr\|E4R7V4\|E4R7V4... - TolQ OS=Pseudomonas putida (strain BIRD-1) GN=tolQ PE=3 SV=1 gi\|24982667, gi\|... - gi\|26987954\|ref\|NP_743379.1\| biopolymer transport protein TolQ [Pseudomonas putida KT2440], gi\|24982... gi\|166861680, gi... - gi\|167035192\|ref\|YP_001670423.1\| protein TolQ [Pseudomonas putida GB-1], gi\|166861680\|gb\|ABZ00088.1\|... tr\|I7CI79\|I7CI79... - Biopolymer transport protein TolQ OS=Pseudomonas putida (strain DOT-T1E) GN=tolQ PE=3 SV=1 gi\|5514776 - gi\|5514776\|emb\|CAB50778.1\| TolQ protein [Pseudomonas putida] gi\|119859089, gi... - gi\|170723157\|ref\|YP_001750845.1\| protein TolQ [Pseudomonas putida W619], gi\|169761160\|gb\|ACA74476.1\|... gi\|148546491, gi... - gi\|148546491\|ref\|YP_001266593.1\| Tol-Pal system, TolQ [Pseudomonas putida F1], gi\|148510549\|gb\|ABQ77...	207.0	[0..6]	[223..10]
gi\|37199210, gi\|... - gi\|37680462\|ref\|NP_935071.1\| tol biopolymer transport system, TolQ protein [Vibrio vulnificus YJ016]... gi\|27361645, gi\|... - gi\|27365497\|ref\|NP_761025.1\| TolQ protein [Vibrio vulnificus CMCP6], gi\|27361645\|gb\|AAO10552.1\|AE016...	206.0	[0..1]	[222..1]
gi\|84316459, gi\|... - gi\|84316459\|ref\|ZP_00964933.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa C3719]...	206.0	[0..6]	[223..10]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAEPTLWSF VAHASLIVKM VIFLLFLASI ASWSIIIQRV FFVKRTRREM KKFEHLFWSG  60
   61 VDLTTLYNRL SKKKDKLIGM SSIFYAGFNE FTRLRQELGS NPKAILEGTH RAMRIAQSRE 120
  121 ADLLERNLSF LATVGSTSPY VGLFGTVWGI MTSFRALGAV QQVTIAMVAP GISEALIATA 180
  181 VGLFAAIPAV IAYNRFSNEL NAITQNYDTF QEEILNILHR RVYKYKLEEA NAKATVS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.568636
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits