YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOC_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOC_COXBU.

Description	E-value	Query Range	Subject Range
NUOC_COXBR - NADH-quinone oxidoreductase subunit C OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=nuoC ...	283.0	[0..1]	[227..1]
gi\|46097031, gi\|... - gi\|71006324\|ref\|XP_757828.1\| hypothetical protein UM01681.1 [Ustilago maydis 521], ref\|XP_399296.1\| ...	260.0	[0..4]	[226..182]
gi\|50748097 - gi\|50748097\|ref\|XP_421103.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 3, 3...	256.0	[0..7]	[220..189]
NUOC_XANC8 - NADH-quinone oxidoreductase subunit C OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nuoC... NUOC_XANCP - NADH-quinone oxidoreductase subunit C OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / ... NUOC_XANCP - NADH-quinone oxidoreductase subunit C OS=Xanthomonas campestris pv. campestris GN=nuoC PE=3 SV=1 NUOC_XANCB - NADH-quinone oxidoreductase subunit C OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoC...	252.0	[0..1]	[227..1]
NUOC_XANAC - NADH-quinone oxidoreductase subunit C OS=Xanthomonas axonopodis pv. citri (strain 306) GN=nuoC PE=3 ... NUOC_XANAC - NADH-quinone oxidoreductase subunit C OS=Xanthomonas axonopodis pv. citri GN=nuoC PE=3 SV=1	252.0	[0..1]	[227..1]
NDUS3_MOUSE - NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 ...	251.0	[0..7]	[220..60]
NUOC_XANOR - NADH-quinone oxidoreductase subunit C OS=Xanthomonas oryzae pv. oryzae GN=nuoC PE=3 SV=1 NUOC_XANOP - NADH-quinone oxidoreductase subunit C OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoC PE=3 ... NUOC_XANOR - NADH-quinone oxidoreductase subunit C OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN... NUOC_XANOM - NADH-quinone oxidoreductase subunit C OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoC ...	251.0	[0..1]	[227..1]
NUOC_XANC5 - NADH-quinone oxidoreductase subunit C OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nu...	251.0	[0..1]	[227..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKQTLIDA INDRFNSQIE AVVAGVDMVT IELLPTHLLE VCTALRDDPP FNFELLLDVC  60
   61 GVDYLEYGMS PWRTEETPNT GFSRGFEEVI QEQIIPWNKP RFAVVYHLLS LRHNHRIRLK 120
  121 TYVEGDPPLV PSVIKIWSSA DWYEREAFDL YGIVFEGHPD LRRLLTDYGF VGHPFRKDFP 180
  181 LIGEVELRYD AAQQRCVYEP VSIQPRVLVP KVIRVDSRYE KGEKENG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.09691
Match:	2fug5
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits