YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541946, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541946, gi|....

Description	E-value	Query Range	Subject Range
gi\|3319758, gi\|2... - gi\|3319758\|emb\|CAA19924.1\| putative integral membrane protein [Streptomyces coelicolor A3(2)], gi\|21... gi\|7480824 - pir\|\|T35470 probable integral membrane protein - Streptomyces coelicolor	195.0	[0..43]	[272..164]
gi\|29829165, gi\|... - gi\|29829165\|ref\|NP_823799.1\| phosphatidate cytidylyltransferase [Streptomyces avermitilis MA-4680], ...	191.0	[0..43]	[272..164]
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	185.0	[0..5]	[270..1]
gi\|108806523, gi... - gi\|108806523\|ref\|YP_650439.1\| CDP-diglyceride synthase [Yersinia pestis Antiqua], gi\|108778436\|gb\|AB... gi\|22127005, gi\|... - gi\|22127005\|ref\|NP_670428.1\| CDP-diglyceride synthase [Yersinia pestis KIM], gi\|21960051\|gb\|AAM86679... gi\|25288701 - pir\|\|AI0128 phosphatidate cytidylyltransferase (EC 2.7.7.41) [imported] - Yersinia pestis (strain CO... gi\|115346829, gi... - gi\|218928218\|ref\|YP_002346093.1\| CDP-diglyceride synthase [Yersinia pestis CO92], gi\|16121350\|ref\|NP... gi\|152961537, gi... - gi\|153950042\|ref\|YP_001400003.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 31758], gi... gi\|45442568, gi\|... - gi\|45442568\|ref\|NP_994107.1\| CDP-diglyceride synthase [Yersinia pestis biovar Microtus str. 91001], ... gi\|108776758, gi... - gi\|229903553\|ref\|ZP_04518666.1\| CDP-diglyceride synthase [Yersinia pestis Nepal516], gi\|229679323\|gb... gi\|149290563, gi... - gi\|149366949\|ref\|ZP_01888982.1\| phosphatidate cytidylyltransferase [Yersinia pestis CA88-4125], gi\|1... gi\|169749855, gi... - gi\|170023321\|ref\|YP_001719826.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470425 - gi\|167470425\|ref\|ZP_02335129.1\| phosphatidate cytidylyltransferase [Yersinia pestis FV-1] gi\|166011927, gi... - gi\|166011927\|ref\|ZP_02232825.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|165912260, gi... - gi\|165939857\|ref\|ZP_02228397.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|165920971, gi... - gi\|165927075\|ref\|ZP_02222907.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229837757, gi... - gi\|229837757\|ref\|ZP_04457917.1\| CDP-diglyceride synthase [Yersinia pestis Pestoides A], gi\|229704134... gi\|162421094, gi... - gi\|162421094\|ref\|YP_001607766.1\| CDP-diglyceride synthase [Yersinia pestis Angola], gi\|162353909\|gb\|... gi\|167055822, gi... - gi\|167425422\|ref\|ZP_02317175.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Mediaeval... gi\|229689956, gi... - gi\|229843080\|ref\|ZP_04463230.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. Ind... gi\|167419870, gi... - gi\|167419870\|ref\|ZP_02311623.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229697345, gi... - gi\|229840979\|ref\|ZP_04461138.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. PEX... gi\|167050665, gi... - gi\|167399957\|ref\|ZP_02305475.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|166211247, gi... - gi\|166211247\|ref\|ZP_02237282.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s...	185.0	[0..5]	[270..1]
sp\|P0ABG1\|CDSA_ECOLI - Phosphatidate cytidylyltransferase OS=Escherichia coli (strain K12) GN=cdsA PE=1 SV=2 gi\|218703429, gi... - gi\|218703429\|ref\|YP_002410948.1\| CDP-diglyceride synthase [Escherichia coli UMN026], gi\|218430526\|em... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|157065320, gi... - gi\|157159640\|ref\|YP_001456958.1\| CDP-diglyceride synthase [Escherichia coli HS], gi\|157065320\|gb\|ABV... gi\|157158930, gi... - gi\|157158930\|ref\|YP_001461344.1\| CDP-diglyceride synthase [Escherichia coli E24377A], gi\|157080960\|g... gi\|189371124, gi... - gi\|189371124\|gb\|EDU89540.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC869]... gi\|189000432, gi... - gi\|189000432\|gb\|EDU69418.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4076... gi\|168777012, gi... - gi\|187767700\|gb\|EDU31544.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4196... gi\|189360733, gi... - gi\|189360733\|gb\|EDU79152.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4486... gi\|189364912, gi... - gi\|189364912\|gb\|EDU83328.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4501... gi\|238860124, gi... - gi\|238899573\|ref\|YP_002925369.1\| CDP-diglyceride synthase [Escherichia coli BW2952], gi\|238860124\|gb... gi\|168755788, gi... - gi\|189357094\|gb\|EDU75513.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4401... gi\|188014560, gi... - gi\|188014560\|gb\|EDU52682.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC4113... gi\|162139814 - gi\|162139814\|ref\|NP_308204.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. Sakai] CDSA_ECO57 - Phosphatidate cytidylyltransferase OS=Escherichia coli O157:H7 GN=cdsA PE=3 SV=2 gi\|161986588 - gi\|161986588\|ref\|YP_309214.2\| CDP-diglyceride synthase [Shigella sonnei Ss046] gi\|254791308, gi... - gi\|254791308\|ref\|YP_003076145.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. TW14359], g... gi\|161486544 - gi\|161486544\|ref\|NP_835903.2\| CDP-diglyceride synthase [Shigella flexneri 2a str. 2457T] gi\|253972195, gi... - gi\|254160294\|ref\|YP_003043402.1\| CDP-diglyceride synthase [Escherichia coli B str. REL606], gi\|25397... gi\|161367650 - gi\|161367650\|ref\|NP_285869.2\| CDP-diglyceride synthase [Escherichia coli O157:H7 EDL933] gi\|254037594, gi... - gi\|254037594\|ref\|ZP_04871671.1\| phosphatidate cytidylyltransferase [Escherichia sp. 1_1_43], gi\|2268... gi\|24050378, gi\|... - ref\|NP_706120.1\| phosphatidate cytidylyltransferase [Shigella flexneri 2a str. 301], gb\|AAN41827.1\|... gi\|253325842, gi... - gi\|254287097\|ref\|YP_003052845.1\| CDP-diglyceride synthase [Escherichia coli BL21(DE3)], gi\|253976404... gi\|218350372, gi... - gi\|218693640\|ref\|YP_002401307.1\| CDP-diglyceride synthase [Escherichia coli 55989], gi\|218350372\|emb... gi\|218552756, gi... - gi\|218552756\|ref\|YP_002385669.1\| CDP-diglyceride synthase [Escherichia coli IAI1], gi\|218359524\|emb\|... gi\|217324800, gi... - gi\|217324800\|ref\|ZP_03440884.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. TW... gi\|209910624, gi... - gi\|209917365\|ref\|YP_002291449.1\| CDP-diglyceride synthase [Escherichia coli SE11], gi\|209910624\|dbj\|... gi\|85674368, gi\|... - gi\|89107055\|ref\|AP_000835.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. W3110], gi... gi\|209399460, gi... - gi\|209399460\|ref\|YP_002268783.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. E... EG10139 - CDP-diglyceride synthase / CDP-diglyceride synthase, integral membrane protein with eight transmembr... gi\|208818382, gi... - gi\|208818382\|ref\|ZP_03258702.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|208733156, gi... - gi\|208811879\|ref\|ZP_03253208.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... CDSA_SHIFL - Phosphatidate cytidylyltransferase OS=Shigella flexneri GN=cdsA PE=3 SV=2 gi\|208806666, gi... - gi\|208806666\|ref\|ZP_03249003.1\| phosphatidate cytidylyltransferase [Escherichia coli O157:H7 str. EC... gi\|195938143 - gi\|195938143\|ref\|ZP_03083525.1\| CDP-diglyceride synthase [Escherichia coli O157:H7 str. EC4024] gi\|194439143, gi... - gi\|194439143\|ref\|ZP_03071225.1\| phosphatidate cytidylyltransferase [Escherichia coli 101-1], gi\|1944... gi\|194428293, gi... - gi\|194428293\|ref\|ZP_03060835.1\| phosphatidate cytidylyltransferase [Escherichia coli B171], gi\|19441... gi\|193067707, gi... - gi\|193067707\|ref\|ZP_03048674.1\| phosphatidate cytidylyltransferase [Escherichia coli E110019], gi\|19... gi\|193063179, gi... - gi\|193063179\|ref\|ZP_03044270.1\| phosphatidate cytidylyltransferase [Escherichia coli E22], gi\|192931... gi\|188488146, gi... - gi\|188492947\|ref\|ZP_03000217.1\| phosphatidate cytidylyltransferase [Escherichia coli 53638], gi\|1884... gi\|187429746, gi... - gi\|187732754\|ref\|YP_001878977.1\| phosphatidate cytidylyltransferase [Shigella boydii CDC 3083-94], g... gi\|169887646, gi... - gi\|170079811\|ref\|YP_001729131.1\| CDP-diglyceride synthase [Escherichia coli str. K-12 substr. DH10B]...	183.0	[0..5]	[270..1]
gi\|37680736, gi\|... - gi\|37680736\|ref\|NP_935345.1\| CDP-diglyceride synthetase [Vibrio vulnificus YJ016], gi\|37199485\|dbj\|B... gi\|27365212, gi\|... - gi\|27365212\|ref\|NP_760740.1\| CDP-diglyceride synthetase [Vibrio vulnificus CMCP6], gi\|27361359\|gb\|AA...	183.0	[0..5]	[270..2]
gi\|110640394, gi... - gi\|110640394\|ref\|YP_668122.1\| CDP-diglyceride synthase [Escherichia coli 536], gi\|110341986\|gb\|ABG68... gi\|191172767, gi... - gi\|191172767\|ref\|ZP_03034304.1\| phosphatidate cytidylyltransferase [Escherichia coli F11], gi\|190906... gi\|91209245, gi\|... - gi\|91209245\|ref\|YP_539231.1\| CDP-diglyceride synthase [Escherichia coli UTI89], gi\|91070819\|gb\|ABE05... gi\|218363885, gi... - gi\|218557116\|ref\|YP_002390029.1\| CDP-diglyceride synthase [Escherichia coli S88], gi\|218363885\|emb\|C... gi\|237704334, gi... - gi\|237704334\|ref\|ZP_04534815.1\| phosphatidate cytidylyltransferase [Escherichia sp. 3_2_53FAA], gi\|2...	182.0	[0..5]	[270..1]
gi\|26246121, gi\|... - gi\|26246121\|ref\|NP_752160.1\| CDP-diglyceride synthase [Escherichia coli CFT073], gi\|26106518\|gb\|AAN7... gi\|218425614, gi... - gi\|218688050\|ref\|YP_002396262.1\| CDP-diglyceride synthase [Escherichia coli ED1a], gi\|218425614\|emb\|... gi\|170520306, gi... - gi\|170682588\|ref\|YP_001742303.1\| phosphatidate cytidylyltransferase [Escherichia coli SMS-3-5], gi\|1... gi\|227884912, gi... - gi\|227884912\|ref\|ZP_04002717.1\| phosphatidate cytidylyltransferase [Escherichia coli 83972], gi\|2278...	182.0	[0..5]	[270..1]
gi\|113896670, gi... - gi\|113941684\|ref\|ZP_01427470.1\| Phosphatidate cytidylyltransferase [Herpetosiphon aurantiacus ATCC 2...	182.0	[0..1]	[267..47]
CDS3_ARATH - Phosphatidate cytidylyltransferase 3 OS=Arabidopsis thaliana GN=CDS3 PE=1 SV=1	181.0	[0..2]	[267..92]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNMLKYRV LTALILFFFV LLAIWFLPMP WFAILIGAIM IWAAWEWSAL AGIKNKYWRG  60
   61 FYVILLGITL FAAYYLPIFW VLIASVILWL WAAVAIFCYA IYIAPLGFQY PAVKLIVGFF 120
  121 ALISCWLAIN ALREDI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [137-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPGWLLFGL MLVWSMDTGA YAAGRLWGKH TLIARVSPKK TWEGLGGGII LSLLIAVIGG  60
   61 ILFHLPFSQL SLVILLALIT VFFAVIGDLF ESMLKRQAGV KDSGRLLPGH GGILDRVDSL 120
  121 IVALPIFTLG SLLISG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits