YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541825, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541825, gi|....

Description	E-value	Query Range	Subject Range
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	281.0	[0..11]	[267..84]
gi\|58201026 - gi\|58201026\|gb\|AAW66658.1\| geranyl diphosphate synthase [Picrorhiza kurrooa]	279.0	[0..2]	[267..82]
GGPP1_ARATH - Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis th...	276.0	[0..1]	[266..77]
gi\|92868507, gi\|... - gi\|92871726\|gb\|ABE80654.1\| Polyprenyl synthetase [Medicago truncatula], gi\|92868507\|gb\|ABE78512.1\| P...	275.0	[0..10]	[266..91]
gi\|46241274 - gi\|46241274\|gb\|AAS82860.1\| geranyl diphosphate synthase large subunit [Antirrhinum majus]	273.0	[0..2]	[266..83]
GGPPS_CAPAN - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1	273.0	[0..11]	[266..89]
gi\|3885426 - gi\|3885426\|gb\|AAC77874.1\| geranylgeranyl pyrophosphate synthase [Helianthus annuus]	272.0	[0..11]	[265..75]
GGPPS_HEVBR - Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1	271.0	[0..11]	[266..90]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVITIYQER INHKLGSILP DIRQTPQRLH EAMTYAVMSG GKRIRPLFTY ATGFSFEVDP  60
   61 AQIDNAACAI ELMHCYSLVH DDLPAMDDDD FRRGKPSCHK AFDEATAILT GDALQCLAFE 120
  121 VLARDKNIRL INVLANACGS LGMAGGQQLD LEFKNKEATP EQIEIVHRLK TGALFSTAIE 180
  181 LGALAAGCLD EKRLQKLRKL GATVGLIFQW QDDLADQTVE DEKIPLINRI GVLFNQVEKL 240
  241 LNELEGNNSF LQELIHFLKS SITAVIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.30103
Match:	2j1pA
Description:	No description for 2j1pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits