YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541538, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541538, gi|....

Description	E-value	Query Range	Subject Range
gi\|21228644, gi\|... - gi\|21228644\|ref\|NP_634566.1\| phosphohydrolase [Methanosarcina mazei Go1], gi\|20907144\|gb\|AAM32238.1\|...	227.0	[0..2]	[245..27]
gi\|19915297, gi\|... - gi\|20090298\|ref\|NP_616373.1\| NAD+ pyrophosphatase [Methanosarcina acetivorans C2A], gi\|19915297\|gb\|A...	225.0	[0..2]	[245..27]
gi\|72397456, gi\|... - gi\|73670294\|ref\|YP_306309.1\| phosphohydrolase [Methanosarcina barkeri str. Fusaro], gi\|72397456\|gb\|A...	222.0	[0..2]	[245..31]
gi\|95927666 - gi\|95927666\|ref\|ZP_01310421.1\| hypothetical protein CburR_01000611 [Coxiella burnetii RSA 331]	219.0	[0..1]	[248..1]
gi\|154706683, gi... - gi\|94492036\|ref\|ZP_01299245.1\| hypothetical protein CburD_01000925 [Coxiella burnetii Dugway 7E9-12]...	218.0	[0..1]	[245..1]
NUDC_VIBVU - NADH pyrophosphatase OS=Vibrio vulnificus GN=nudC PE=3 SV=1 NUDC_VIBVU - NADH pyrophosphatase OS=Vibrio vulnificus (strain CMCP6) GN=nudC PE=3 SV=1	208.0	[0..2]	[247..12]
gi\|75828316 - gi\|75828316\|ref\|ZP_00757751.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n... gi\|75829160, gi\|... - gi\|75829160\|ref\|ZP_00758474.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n... gi\|75814787 - gi\|75814787\|ref\|ZP_00745337.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	203.0	[0..3]	[247..9]
NUDC_VIBCH - NADH pyrophosphatase OS=Vibrio cholerae GN=nudC PE=3 SV=1 gi\|121591011, gi... - gi\|121591011\|ref\|ZP_01678329.1\| MutT/nudix family protein [Vibrio cholerae 2740-80], gi\|121547152\|gb... NUDC_VIBC3 - NADH pyrophosphatase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)... gi\|153224506, gi... - gi\|153224506\|ref\|ZP_01954480.1\| MutT/nudix family protein [Vibrio cholerae MAK 757], gi\|124117598\|gb... gi\|121728878, gi... - gi\|121728878\|ref\|ZP_01681887.1\| MutT/nudix family protein [Vibrio cholerae V52], gi\|121628846\|gb\|EAX... gi\|126509771, gi... - gi\|153819683\|ref\|ZP_01972350.1\| MutT/nudix family protein [Vibrio cholerae NCTC 8457], gi\|126509771\|... gi\|229355979, gi... - gi\|229506874\|ref\|ZP_04396382.1\| NADH pyrophosphatase [Vibrio cholerae BX 330286], gi\|229355979\|gb\|EE... gi\|125617330, gi... - gi\|254851640\|ref\|ZP_05240990.1\| NADH pyrophosphatase [Vibrio cholerae MO10], gi\|254847345\|gb\|EET2575... gi\|229516061, gi... - gi\|229516061\|ref\|ZP_04405512.1\| NADH pyrophosphatase [Vibrio cholerae RC9], gi\|229346964\|gb\|EEO11931... NUDC_VIBCH - NADH pyrophosphatase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=nud... gi\|153823147, gi... - gi\|229508679\|ref\|ZP_04398173.1\| NADH pyrophosphatase [Vibrio cholerae B33], gi\|229354314\|gb\|EEO19243... NUDC_VIBCM - NADH pyrophosphatase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=nudC PE=3 SV=1 gi\|229369043, gi... - gi\|229606388\|ref\|YP_002877036.1\| NADH pyrophosphatase [Vibrio cholerae MJ-1236], gi\|229369043\|gb\|ACQ...	202.0	[0..3]	[247..20]
NUDC_VIBPA - NADH pyrophosphatase OS=Vibrio parahaemolyticus GN=nudC PE=3 SV=1 NUDC_VIBPA - NADH pyrophosphatase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nudC PE=3 SV... gi\|153838910, gi... - gi\|153838910\|ref\|ZP_01991577.1\| NADH pyrophosphatase [Vibrio parahaemolyticus AQ3810], gi\|149747618\|...	202.0	[0..3]	[247..13]
gi\|32035585 - gi\|32035585\|ref\|ZP_00135511.1\| COG2816: NTP pyrophosphohydrolases containing a Zn-finger, probably n...	201.0	[0..1]	[245..7]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLRLLFFA NQLLVVKRKN FCELPAFDDW PEWVGDLKYP HNLGVYNNCY CYAAEVDEQF  60
   61 DKDENYVWMS LRSAVENIDQ KWFSVAARAY QIINWDKNHR YCGRCGQETK KNSNIFERQC 120
  121 LSCNLFFYPK ISPSIIVLIR KANKILLARK SEFPAGVYGL IAGFVEPGES LEEALHREVA 180
  181 EEVGISIKNI HYFGSQPWPF PDSLMLAFIA DYAGGEIELN DGELESAGWY DANHLPGLPS 240
  241 SASCSTTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits