YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541505, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541505, gi|....

Description	E-value	Query Range	Subject Range
gi\|66046507, gi\|... - gi\|66046507\|ref\|YP_236348.1\| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv. syringae...	177.0	[0..3]	[254..12]
gi\|209911295, gi... - gi\|209918036\|ref\|YP_002292120.1\| endonuclease/exonuclease/phosphatase [Escherichia coli SE11], gi\|20... EG13672 - endo /exonuclease /phosphatase family protein / Endo /exonuclease /phosphatase family protein, function ... gi\|215485878, gi... - gi\|215485878\|ref\|YP_002328309.1\| predicted DNase [Escherichia coli O127:H6 str. E2348/69], gi\|215263... gi\|217320545, gi... - gi\|217324324\|ref\|ZP_03440408.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia col... gi\|218360142, gi... - gi\|218553374\|ref\|YP_002386287.1\| putative metal-dependent hydrolase [Escherichia coli IAI1], gi\|2183... gi\|218364464, gi... - gi\|218557695\|ref\|YP_002390608.1\| putative metal-dependent hydrolase [Escherichia coli S88], gi\|21836... gi\|218426140, gi... - gi\|218688576\|ref\|YP_002396788.1\| putative metal-dependent hydrolase [Escherichia coli ED1a], gi\|2184... gi\|218694264, gi... - gi\|218694264\|ref\|YP_002401931.1\| putative metal-dependent hydrolase [Escherichia coli 55989], gi\|218... gi\|218431265, gi... - gi\|218704168\|ref\|YP_002411687.1\| putative metal-dependent hydrolase [Escherichia coli UMN026], gi\|21... YBHP_ECOLI - Hypothetical protein ybhP - Escherichia coli gi\|74311333, gi\|... - gi\|74311333\|ref\|YP_309752.1\| hypothetical protein SSON_0769 [Shigella sonnei Ss046], gi\|73854810\|gb\|... gi\|168764306, gi... - gi\|189365678\|gb\|EDU84094.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia coli O1... gi\|189373043, gi... - gi\|189373043\|gb\|EDU91459.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia coli O1... gi\|189377721, gi... - gi\|189377721\|gb\|EDU96137.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia coli O1... gi\|227884248, gi... - gi\|227884248\|ref\|ZP_04002053.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia col... gi\|170080449, gi... - gi\|170080449\|ref\|YP_001729769.1\| DNase [Escherichia coli str. K-12 substr. DH10B], gi\|169888284\|gb\|A... gi\|229212831, gi... - gi\|229212831\|ref\|ZP_04339183.1\| metal-dependent hydrolase [Leptotrichia buccalis DSM 1135], gi\|22856... gi\|170521813, gi... - gi\|170684095\|ref\|YP_001742893.1\| endonuclease/exonuclease/phosphatase family protein [Escherichia co... gi\|226898461, gi... - gi\|237707251\|ref\|ZP_04537732.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|194433120, gi... - gi\|194433120\|ref\|ZP_03065402.1\| endonuclease/exonuclease/phosphatase family protein [Shigella dysent... gi\|238900049, gi... - gi\|238900049\|ref\|YP_002925845.1\| putative DNase [Escherichia coli BW2952], gi\|238862335\|gb\|ACR64333.... gi\|194413735, gi... - gi\|75210616\|ref\|ZP_00710764.1\| COG3568: Metal-dependent hydrolase [Escherichia coli B171], gi\|194428... gi\|12513779, gi\|... - gi\|15800541\|ref\|NP_286553.1\| hypothetical protein Z1009 [Escherichia coli O157:H7 EDL933], gi\|125137... gi\|191169284, gi... - gi\|75227415\|ref\|ZP_00714189.1\| COG3568: Metal-dependent hydrolase [Escherichia coli B7A], gi\|1911692... gi\|89203327, gi\|... - gi\|89203327\|ref\|ZP_01182007.1\| Endonuclease/exonuclease/phosphatase [Bacillus cereus subsp. cytotoxi... gi\|4062347, gi\|8... - gi\|89107641\|ref\|AP_001421.1\| predicted DNase [Escherichia coli str. K-12 substr. W3110], gi\|4062347\|... gi\|68006957, gi\|... - gi\|68056433\|ref\|ZP_00540553.1\| Endonuclease/exonuclease/phosphatase [Exiguobacterium sibiricum 255-1... gi\|68209718, gi\|... - gi\|68209718\|ref\|ZP_00561592.1\| Endonuclease/exonuclease/phosphatase [Desulfitobacterium hafniense DC... gi\|193069403, gi... - gi\|75236152\|ref\|ZP_00720276.1\| COG3568: Metal-dependent hydrolase [Escherichia coli E110019], gi\|193... gi\|75257612, gi\|... - gi\|75257612\|ref\|ZP_00729109.1\| COG3568: Metal-dependent hydrolase [Escherichia coli E22], gi\|1930644... gi\|91209822, gi\|... - gi\|91209822\|ref\|YP_539808.1\| putative DNase [Escherichia coli UTI89], gi\|91071396\|gb\|ABE06277.1\| put... gi\|13360327, gi\|... - gi\|15830122\|ref\|NP_308895.1\| hypothetical protein ECs0868 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110804791, gi... - gi\|110804791\|ref\|YP_688311.1\| hypothetical protein SFV_0773 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|48728441 - ref\|ZP_00262205.1\| COG3568: Metal-dependent hydrolase [Pseudomonas fluorescens PfO-1] YBHP_SHIFL - Uncharacterized protein YbhP OS=Shigella flexneri GN=ybhP PE=4 SV=1 gi\|24112158, gi\|... - gi\|24112158\|ref\|NP_706668.1\| hypothetical protein SF0740 [Shigella flexneri 2a str. 301], gi\|2405099... gi\|71668654, gi\|... - gi\|71678189\|ref\|ZP_00675912.1\| Endonuclease/exonuclease/phosphatase [Trichodesmium erythraeum IMS101... gi\|30062275, gi\|... - gi\|30062275\|ref\|NP_836446.1\| hypothetical protein S0781 [Shigella flexneri 2a str. 2457T], gi\|300405... YBHP_ECOL6 - Uncharacterized protein YbhP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybhP ... EG13672 - endo /exonuclease /phosphatase family protein / Endo /exonuclease /phosphatase family protein, function ... YBHP_ECO57 - Uncharacterized protein YbhP OS=Escherichia coli O157:H7 GN=ybhP PE=4 SV=1 YBHP_ECOL6 - Uncharacterized protein ybhP OS=Escherichia coli O6 GN=ybhP PE=4 SV=1 gi\|114845288, gi... - gi\|114845288\|ref\|ZP_01455702.1\| Endonuclease/exonuclease/phosphatase [Thermoanaerobacter ethanolicus... gi\|118065711, gi... - gi\|118065711\|ref\|ZP_01533980.1\| Endonuclease/exonuclease/phosphatase [Roseiflexus castenholzii DSM 1...	177.0	[0..10]	[254..9]
gi\|157080075, gi... - gi\|75189831\|ref\|ZP_00703098.1\| COG3568: Metal-dependent hydrolase [Escherichia coli E24377A], gi\|157...	177.0	[0..10]	[254..9]
gi\|253774207, gi... - gi\|254287681\|ref\|YP_003053429.1\| predicted DNase [Escherichia coli BL21(DE3)], gi\|253976988\|gb\|ACT42... gi\|242376582, gi... - gi\|251784309\|ref\|YP_002998613.1\| hypothetical protein B21_00774 [Escherichia coli BL21], gi\|24237658... gi\|124527009, gi... - gi\|124527009\|ref\|ZP_01698846.1\| Endonuclease/exonuclease/phosphatase [Escherichia coli B], gi\|124501... gi\|254160867, gi... - gi\|254160867\|ref\|YP_003043975.1\| predicted DNase [Escherichia coli B str. REL606], gi\|253972768\|gb\|A... gi\|188490316, gi... - gi\|75512793\|ref\|ZP_00735285.1\| COG3568: Metal-dependent hydrolase [Escherichia coli 53638], gi\|18849... gi\|157065945, gi... - gi\|75194941\|ref\|ZP_00705011.1\| COG3568: Metal-dependent hydrolase [Escherichia coli HS], gi\|15716026... gi\|194422683, gi... - gi\|83586093\|ref\|ZP_00924730.1\| COG3568: Metal-dependent hydrolase [Escherichia coli 101-1], gi\|19443... gi\|170020854, gi... - gi\|170020854\|ref\|YP_001725808.1\| endonuclease/exonuclease/phosphatase [Escherichia coli ATCC 8739], ...	176.0	[0..10]	[254..9]
gi\|187429973, gi... - gi\|75178420\|ref\|ZP_00698474.1\| COG3568: Metal-dependent hydrolase [Shigella boydii BS512], gi\|187732...	176.0	[0..10]	[254..9]
gi\|191174511, gi... - gi\|75236198\|ref\|ZP_00720315.1\| COG3568: Metal-dependent hydrolase [Escherichia coli F11], gi\|1911745... gi\|110640994, gi... - gi\|110640994\|ref\|YP_668722.1\| hypothetical protein ECP_0804 [Escherichia coli 536], gi\|110342586\|gb\|...	176.0	[0..10]	[254..9]
gi\|115512096, gi... - gi\|117622972\|ref\|YP_851885.1\| metal-dependent hydrolase [Escherichia coli APEC O1], gi\|115512096\|gb\|...	175.0	[0..10]	[254..9]
gi\|71736423, gi\|... - gi\|71736423\|ref\|YP_275358.1\| endonuclease/exonuclease/phosphatase family protein [Pseudomonas syring...	172.0	[0..11]	[254..1]
gi\|161830200, gi... - gi\|95927623\|ref\|ZP_01310378.1\| hypothetical protein CburR_01000568 [Coxiella burnetii RSA 331], gi\|1...	172.0	[0..1]	[255..1]
gi\|81240285, gi\|... - gi\|82776137\|ref\|YP_402484.1\| hypothetical protein SDY_0813 [Shigella dysenteriae Sd197], gi\|81240285...	172.0	[0..10]	[254..9]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLTPKRDA FTVLSYNIHK GFSARYRRFV LPDIREALRA IDADIVLLQE VQGKHHKSRL  60
   61 KKFAHADLPQ TEFIAESKWP HYMYGKNAVY GSAHHGNALL SNFPFKMVEN INVSLSQRAS 120
  121 RSILHAIIDY EPTVELHVIC IHLGLFRAER DYQLITLSKR IEAHVPSHAP LIIAGDFNDW 180
  181 RRGAFNYMEK ELELKEVYKV LEGKHAKTYP ASRPTLEVDR IYYRGLKLLS GEIFNESYWK 240
  241 KLSDHLPLHA KFAIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1de8B
Description:	DNA repair endonuclease Hap1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.13555370693179	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.0882299598512	bayes_pls_golite062009
hydrolase activity	0.958422547201991	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: