YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541315, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541315, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	216.0	[0..2]	[211..105]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	209.0	[0..3]	[211..4]
gi\|82402957, gi\|... - gi\|82499061\|ref\|ZP_00884513.1\| Response regulator receiver [Caldicellulosiruptor saccharolyticus DSM...	207.0	[0..2]	[211..1]
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	206.0	[0..1]	[211..1]
gi\|51855517, gi\|... - gi\|51891828\|ref\|YP_074519.1\| two-component response regulator [Symbiobacterium thermophilum IAM 1486...	206.0	[0..3]	[210..5]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	206.0	[0..2]	[210..4]
gi\|89897369, gi\|... - gi\|89897369\|ref\|YP_520856.1\| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51], gi\|893...	206.0	[0..2]	[211..1]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	205.0	[0..2]	[211..4]
gi\|28209958, gi\|... - gi\|28209958\|ref\|NP_780902.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820239...	205.0	[0..2]	[211..24]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVLIVDDE QLVREALKLL LKDASGVKVI GEAETGEMAL ASAREKRPNV ILLDVHLPDF  60
   61 SGLYISQKLL RQYPETKVII LTSEKNKTFS RRLLEVGVHS YLTKEAEQEE LIQAIKEVQK 120
  121 GKRIISPKIA SQLAISKMTS QVSGVLDSIS DREMEILLMM VRGVPTETIA QKLHLSPKTV 180
  181 STYRVAIFKK LNVKNDAELI LLGMRQGLLQ E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.154902
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits