YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654013, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654013, gi|....

Description	E-value	Query Range	Subject Range
TAL_AQUAE - Probable transaldolase OS=Aquifex aeolicus (strain VF5) GN=tal PE=3 SV=1 TAL_AQUAE - Probable transaldolase OS=Aquifex aeolicus GN=tal PE=3 SV=1	280.0	[0..11]	[232..1]
gi\|58177039, gi\|... - gi\|58177049\|pdb\|1VPX\|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295) From Thermo...	277.0	[0..11]	[227..13]
TAL_THEMA - Transaldolase OS=Thermotoga maritima GN=tal PE=1 SV=1 TAL_THEMA - Transaldolase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=tal PE=1 S...	277.0	[0..11]	[227..1]
TAL_METJA - Probable transaldolase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM ... TAL_METJA - Probable transaldolase OS=Methanocaldococcus jannaschii GN=tal PE=3 SV=1	275.0	[0..11]	[225..1]
TAL_METMP - Probable transaldolase OS=Methanococcus maripaludis (strain S2 / LL) GN=tal PE=3 SV=1 TAL_METMP - Probable transaldolase OS=Methanococcus maripaludis GN=tal PE=3 SV=1	275.0	[0..11]	[231..1]
TAL_GEOUR - Probable transaldolase OS=Geobacter uraniireducens (strain Rf4) GN=tal PE=3 SV=1	268.0	[0..11]	[228..1]
gi\|7473983 - gi\|7473983\|pir\|\|G75407 transaldolase - Deinococcus radiodurans (strain R1) gi\|15806354, gi\|... - gi\|6459090\|gb\|AAF10909.1\|AE001980_4 transaldolase [Deinococcus radiodurans R1], gi\|15806354\|ref\|NP_2...	265.0	[0..6]	[231..48]
TAL_BDEBA - Probable transaldolase OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD... TAL_BDEBA - Probable transaldolase OS=Bdellovibrio bacteriovorus GN=tal PE=3 SV=1	264.0	[0..11]	[231..1]
gi\|241884203, gi... - gi\|241903436\|ref\|ZP_04788160.1\| transaldolase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|2... gi\|166855877, gi... - gi\|76796335\|ref\|ZP_00778699.1\| Transaldolase C [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76588...	264.0	[0..11]	[231..2]
TAL_GEOMG - Probable transaldolase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tal PE...	263.0	[0..11]	[228..1]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDHLQELK VKIFADGANL EEMVKFSTHP YIKGFTTNPT LMRQAGIVDY EAFAHQALAQ  60
   61 ITKLPISFEV FADELDEMED QARYIASWGN NVNIKIPVTN TKGQFTGPII QRLSEDGITL 120
  121 NITALTTHSQ VEKVCQSFAD DTPGIVSVFA GRVADSGRDP EDHMRKALEI VAQKPSLELL 180
  181 WASPRELFNI IQANRIGCHI ITVAHNILAK LPLLGKDLTQ YSLETVQMFA RDAQASRYSI 240
  241 HCSSAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1vpxA
Description:	Crystal structure of Transaldolase (EC 2.2.1.2) (TM0295) from Thermotoga maritima at 2.40 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	3.28746773527289	bayes_pls_golite062009
transaldolase activity	2.77878684721788	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.41110985630781	bayes_pls_golite062009
porphobilinogen synthase activity	0.658378297259497	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.0319140634878892	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: