YRC Public Data Repository - Protein Structure Prediction

Protein:	PAND_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAND_COXBU.

Description	E-value	Query Range	Subject Range
gi\|83726522, gi\|... - gi\|83746753\|ref\|ZP_00943801.1\| Aspartate 1-decarboxylase [Ralstonia solanacearum UW551], gi\|83726522...	193.0	[0..1]	[111..60]
PAND_CARHZ - Aspartate 1-decarboxylase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...	191.0	[0..1]	[107..1]
PAND_CLOTH - Aspartate 1-decarboxylase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253302, gi... - gi\|196253302\|ref\|ZP_03151935.1\| aspartate 1-decarboxylase [Clostridium thermocellum DSM 4150], gi\|19...	189.0	[0..1]	[108..1]
PAND_CALS8 - Aspartate 1-decarboxylase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp...	189.0	[0..1]	[106..1]
PAND_BURVG - Aspartate 1-decarboxylase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=panD PE=3 SV=1	188.0	[0..1]	[107..1]
PAND_NEIMB - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup B (strain MC58) GN=panD PE=3 SV=1 gi\|225365767, gi... - gi\|225365767\|ref\|ZP_03745625.1\| hypothetical protein NEICINOT_01767 [Neisseria cinerea ATCC 14685], ... gi\|254668628, gi... - gi\|254805086\|ref\|YP_003083307.1\| Aspartate 1-decarboxylase [Neisseria meningitidis], gi\|254668628\|em... PAND_NEIMB - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup B GN=panD PE=3 SV=1 gi\|11280004 - pir\|\|A81100 aspartate 1-decarboxylase (EC 4.1.1.11) NMB1282 [similarity] - Neisseria meningitidis (s...	187.0	[0..1]	[106..1]
PAND_PELTS - Aspartate 1-decarboxylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	187.0	[0..1]	[106..1]
gi\|134281168, gi... - gi\|134281168\|ref\|ZP_01767877.1\| aspartate 1-decarboxylase [Burkholderia pseudomallei 305], gi\|134247... gi\|167909976 - gi\|167909976\|ref\|ZP_02497067.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei 112] gi\|167918009 - gi\|167918009\|ref\|ZP_02505100.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei BCC215] gi\|167844741 - gi\|167844741\|ref\|ZP_02470249.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei B7210] gi\|167893277 - gi\|167893277\|ref\|ZP_02480679.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei 7894] gi\|194313199, gi... - gi\|254177536\|ref\|ZP_04884191.1\| aspartate 1-decarboxylase [Burkholderia mallei ATCC 10399], gi\|19431... gi\|217397617, gi... - gi\|217420313\|ref\|ZP_03451819.1\| aspartate 1-decarboxylase [Burkholderia pseudomallei 576], gi\|217397... PAND_BURP1 - Aspartate 1-decarboxylase OS=Burkholderia pseudomallei (strain 1710b) GN=panD PE=3 SV=1 gi\|85067129 - gi\|85067129\|ref\|ZP_01027982.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia mallei 10229] gi\|194574726, gi... - gi\|87315848\|ref\|ZP_01096871.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia mallei 2002721280], ... gi\|238520340, gi... - gi\|67639742\|ref\|ZP_00438578.1\| aspartate 1-decarboxylase [Burkholderia mallei GB8 horse 4], gi\|23852... PAND_BURM7 - Aspartate 1-decarboxylase OS=Burkholderia mallei (strain NCTC 10247) GN=panD PE=3 SV=1 gi\|194570048, gi... - gi\|83680507\|ref\|ZP_00942212.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia pseudomallei 406e], ... gi\|100915638, gi... - gi\|67636222\|ref\|ZP_00435169.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia mallei 10399], gi\|10... gi\|254190812, gi... - gi\|67752095\|ref\|ZP_00491111.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia pseudomallei Pasteur... PAND_BURMS - Aspartate 1-decarboxylase OS=Burkholderia mallei (strain SAVP1) GN=panD PE=3 SV=1 gi\|254181413, gi... - gi\|99910338\|ref\|ZP_01317365.1\| hypothetical protein Bpse1_03003285 [Burkholderia pseudomallei 1655],... gi\|67685361, gi\|... - gi\|90293941\|ref\|ZP_01213538.1\| hypothetical protein Bpse17_02001242 [Burkholderia pseudomallei 1710a... gi\|83619036, gi\|... - gi\|83619036\|ref\|ZP_00929480.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia mallei FMH], gi\|2541... gi\|147753133, gi... - gi\|83623928\|ref\|ZP_00934186.1\| COG0853: Aspartate 1-decarboxylase [Burkholderia mallei JHU], gi\|2542... PAND_BURP0 - Aspartate 1-decarboxylase OS=Burkholderia pseudomallei (strain 1106a) GN=panD PE=1 SV=1 gi\|82536563, gi\|... - gi\|82536563\|ref\|ZP_00895568.1\| hypothetical protein Bpse110_02002225 [Burkholderia pseudomallei 1106... PAND_BURPS - Aspartate 1-decarboxylase OS=Burkholderia pseudomallei (strain K96243) GN=panD PE=3 SV=1 PAND_BURMA - Aspartate 1-decarboxylase OS=Burkholderia mallei (strain ATCC 23344) GN=panD PE=3 SV=1 PAND_BURM9 - Aspartate 1-decarboxylase OS=Burkholderia mallei (strain NCTC 10229) GN=panD PE=3 SV=1 gi\|167737589 - gi\|167737589\|ref\|ZP_02410363.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei 14] gi\|167814724 - gi\|167814724\|ref\|ZP_02446404.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei 91] gi\|243061360, gi... - gi\|243061360\|gb\|EES43546.1\| aspartate 1-decarboxylase [Burkholderia mallei PRL-20], gi\|167003058\|ref... gi\|167718562 - gi\|167718562\|ref\|ZP_02401798.1\| aspartate alpha-decarboxylase [Burkholderia pseudomallei DM98] PAND_BURMA - Aspartate 1-decarboxylase OS=Burkholderia mallei GN=panD PE=3 SV=1 PAND_BURPS - Aspartate 1-decarboxylase OS=Burkholderia pseudomallei GN=panD PE=3 SV=1	186.0	[0..1]	[111..1]
PAND_BURL3 - Aspartate 1-decarboxylase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 ... PAND_BURS3 - Aspartate 1-decarboxylase OS=Burkholderia sp. (strain 383) GN=panD PE=3 SV=1	186.0	[0..1]	[111..1]
PAND_BURCM - Aspartate 1-decarboxylase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=panD PE=1 SV=1 gi\|170132672, gi... - gi\|170702424\|ref\|ZP_02893311.1\| aspartate 1-decarboxylase [Burkholderia ambifaria IOP40-10], gi\|1701...	186.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISVLKSKI SYATITQKEL FYIGSITIDE AIMERAQLTI NEQVQIVNLN NGERLETYVI  60
   61 PGKRNSNIIA LNGPAARKGE IGDQLFILSY ALIDPTQEKL DPVLVDLKLN D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	2c45A
Description:	No description for 2c45A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits