YRC Public Data Repository - Protein Structure Prediction

Protein:	COAE_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAE_COXBU.

Description	E-value	Query Range	Subject Range
gi\|88819239, gi\|... - gi\|88859013\|ref\|ZP_01133654.1\| dephospho-CoA kinase [Pseudoalteromonas tunicata D2], gi\|88819239\|gb\|...	183.0	[0..2]	[196..11]
gi\|78366242, gi\|... - gi\|78366242\|ref\|ZP_00836524.1\| Dephospho-CoA kinase [Shewanella sp. PV-4], gi\|78361830\|gb\|EAP03652.1...	180.0	[0..2]	[198..4]
gi\|47214587 - gi\|47214587\|emb\|CAG00941.1\| unnamed protein product [Tetraodon nigroviridis]	179.0	[0..1]	[193..1]
gi\|50760633 - gi\|50760633\|ref\|XP_418089.1\| PREDICTED: similar to RIKEN cDNA 6720485C15 [Gallus gallus]	179.0	[0..1]	[187..76]
gi\|115934484, gi... - gi\|72014803\|ref\|XP_782468.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	179.0	[0..1]	[193..1]
SO0413 - kinase putative COAE_SHEON - Dephospho-CoA kinase OS=Shewanella oneidensis (strain MR-1) GN=coaE PE=3 SV=1	177.0	[0..2]	[197..4]
gi\|74020114, gi\|... - gi\|74020114\|ref\|ZP_00690720.1\| Dephospho-CoA kinase [Burkholderia ambifaria AMMD], gi\|72607152\|gb\|EA...	176.0	[0..1]	[198..1]
gi\|68443085 - gi\|68443085\|ref\|XP_700294.1\| PREDICTED: similar to CG1939-PA [Danio rerio]	176.0	[0..1]	[193..1]
gi\|113890537, gi... - gi\|78690768\|ref\|ZP_00855407.1\| Dephospho-CoA kinase [Shewanella sp. MR-7], gi\|78509824\|gb\|EAP23207.1...	176.0	[0..2]	[197..4]
gi\|91785278, gi\|... - gi\|91785278\|ref\|YP_560484.1\| dephospho-CoA kinase, CoaE [Burkholderia xenovorans LB400], gi\|91689232...	176.0	[0..1]	[197..1]

Back

Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIGLTGGI GSGKSTVANY FAELGAPVID ADQIAHEITK PDQAAFKQII NHFGNAVLTK  60
   61 GKFLNRTKLR ELIFENPDDR QWLENLLHPL IIAKMKTQLK KIKAPYCILA IPLLAEASQS 120
  121 VDFIDRILVV DAPETLQIQR TKSRDQLSDQ QIQLILQSQS PREKRLAIAD DVIVNDQTIP 180
  181 ILRKAVFQLH CKYLQIAQT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1vhlA
Description:	Crystal structure of dephospho-CoA kinase with adenosine-5'-diphosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: