YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540661, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540661, gi|....

Description	E-value	Query Range	Subject Range
gi\|254225762, gi... - gi\|75820858\|ref\|ZP_00750896.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_VIBCM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio cholerae serotype O1 (strain M66-2) ... FABZ_VIBC3 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio cholerae serotype O1 (strain ATCC 39... gi\|229349072, gi... - gi\|229513891\|ref\|ZP_04403353.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|229355182, gi... - gi\|229507677\|ref\|ZP_04397182.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|229524251, gi... - gi\|229524251\|ref\|ZP_04413656.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|229522195, gi... - gi\|229522195\|ref\|ZP_04411612.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|229332522, gi... - gi\|229528748\|ref\|ZP_04418138.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|121549521, gi... - gi\|121586255\|ref\|ZP_01676045.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... gi\|124119779, gi... - gi\|153221250\|ref\|ZP_01952265.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... gi\|183012862, gi... - gi\|183179451\|ref\|ZP_02957662.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... gi\|153213814, gi... - gi\|153213814\|ref\|ZP_01949022.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... gi\|126512347, gi... - gi\|153817079\|ref\|ZP_01969746.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... gi\|153825348, gi... - gi\|153825348\|ref\|ZP_01978015.1\| (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase [Vibrio cho... tr\|B2D710\|B2D710... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio cholerae MZO-3 GN=fabZ PE=3 SV=1, 3-...	186.0	[0..1]	[155..1]
gi\|90413540, gi\|... - gi\|90413540\|ref\|ZP_01221531.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium profundum 3TCK]...	185.0	[0..4]	[155..1]
gi\|24050384, gi\|... - ref\|NP_706125.1\| (3R)-hydroxymyristol acyl carrier protein dehydratase [Shigella flexneri 2a str. 30... gi\|26106523, gi\|... - gi\|26246126\|ref\|NP_752165.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Escherichia coli CFT073], gi\|261... gi\|110804232, gi... - gi\|110804232\|ref\|YP_687752.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Shigella flexneri 5 str. 8401],... gi\|91070824, gi\|... - gi\|91209250\|ref\|YP_539236.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Escherichia coli UTI89], gi\|9107...	185.0	[0..4]	[157..32]
FABZ_VIBCH - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio cholerae serotype O1 (strain ATCC 39... gi\|254845084, gi... - gi\|75831252\|ref\|ZP_00760517.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_VIBCH - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio cholerae GN=fabZ PE=3 SV=1 gi\|229512128, gi... - gi\|229512128\|ref\|ZP_04401607.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho... gi\|229369836, gi... - gi\|229607181\|ref\|YP_002877829.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio ch... gi\|229519263, gi... - gi\|229519263\|ref\|ZP_04408706.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Vibrio cho...	185.0	[0..1]	[155..1]
FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum GN=fabZ PE=3 SV=1 FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum (strain SS9) GN=fa...	184.0	[0..4]	[155..1]
lcl\|NC_016856.1_... - [gene=fabZ] [protein=(3R)-hydroxymyristoyl-ACP dehydratase] [protein_id=YP_005235899.1] [location=26... gi\|62126430, gi\|... - gi\|62178797\|ref\|YP_215214.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Salmonella enterica subsp. enter...	184.0	[0..4]	[157..31]
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	184.0	[0..10]	[154..1]
gi\|24983083, gi\|... - gi\|26988334\|ref\|NP_743759.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas putida KT2440], gi\|2...	183.0	[0..8]	[154..16]
gi\|84376882, gi\|... - gi\|84389781\|ref\|ZP_00991333.1\| (3R)-hydroxymyristoyl ACP dehydratase [Vibrio splendidus 12B01], gi\|8...	183.0	[0..4]	[155..1]
gi\|91191570, gi\|... - gi\|91223484\|ref\|ZP_01258749.1\| (3R)-hydroxymyristoyl ACP dehydratase [Vibrio alginolyticus 12G01], g...	183.0	[0..4]	[155..1]

Back

Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFIENLQP YSATELVEAI PQKPPFRFID KILSVDENCI EGIYTFKPTE FFYQGHFPSN  60
   61 PLTPGVILLE SMAQVGLVAF GLYLLSKEMA RNEVMNLVTL FTEANVEFLS PIKPTDTITI 120
  121 HAEKTLWRRK KLKSHAKAHK ADGTLVGIAE LGGIGVRNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: