YRC Public Data Repository - Protein Structure Prediction

Protein:	CSRA1_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSRA1_COXBU.

Description	E-value	Query Range	Subject Range
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	93.0	[0..1]	[57..31]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	92.0	[0..1]	[61..1]
gi\|124509854, gi... - gi\|124546586\|ref\|ZP_01705653.1\| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi\|124... CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1 CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...	91.0	[0..1]	[63..1]
CSRA_HAHCH - Carbon storage regulator homolog OS=Hahella chejuensis (strain KCTC 2396) GN=csrA PE=3 SV=1	91.0	[0..1]	[65..1]
gi\|90331476, gi\|... - gi\|90416723\|ref\|ZP_01224653.1\| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi\|... gi\|90416723\|ref\|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]	91.0	[0..1]	[66..1]
CSRA_SHEDO - Carbon storage regulator homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 150...	91.0	[0..1]	[64..1]
CSRA_SHESM - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-4) GN=csrA PE=3 SV=1 CSRA_SHESR - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-7) GN=csrA PE=3 SV=1 CSRA_SHEPA - Carbon storage regulator homolog OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=csrA PE=3 ... CSRA_SHEB8 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS185) GN=csrA PE=3 SV=1 CSRA_SHEON - Carbon storage regulator homolog OS=Shewanella oneidensis (strain MR-1) GN=csrA PE=3 SV=1 SO3426 - carbon storage regulator CSRA_SHEB5 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=csrA PE=3 S... CSRA_SHEB2 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS223) GN=csrA PE=3 SV=1 CSRA_SHEHH - Carbon storage regulator homolog OS=Shewanella halifaxensis (strain HAW-EB4) GN=csrA PE=3 SV=1 CSRA_SHEB9 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS195) GN=csrA PE=3 SV=1 CSRA_SHESA - Carbon storage regulator homolog OS=Shewanella sp. (strain ANA-3) GN=csrA PE=3 SV=1	90.0	[0..1]	[63..1]
gi\|227161929, gi... - gi\|227357819\|ref\|ZP_03842167.1\| carbon storage regulator [Proteus mirabilis ATCC 29906], gi\|22716192... CSRA_PROMI - Carbon storage regulator homolog OS=Proteus mirabilis GN=csrA PE=3 SV=1 CSRA_PROMH - Carbon storage regulator homolog OS=Proteus mirabilis (strain HI4320) GN=csrA PE=3 SV=1 gi\|226328740, gi... - gi\|226328740\|ref\|ZP_03804258.1\| hypothetical protein PROPEN_02640 [Proteus penneri ATCC 35198], gi\|2...	90.0	[0..1]	[59..1]
CSRA_SHEAM - Carbon storage regulator homolog OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=csrA PE=...	90.0	[0..1]	[62..1]
CSRA_SHEFN - Carbon storage regulator homolog OS=Shewanella frigidimarina (strain NCIMB 400) GN=csrA PE=3 SV=1	90.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLTRTNGQ AIKIGNEGEI TVTVLEVRGN QVRMGIDAPK HIAVHREEIY QRIQEEKPKA  60
   61 PPILEEVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2btiA
Description:	Structure-function studies of the RmsA CsrA post-transcriptional global regulator protein family reveals a class of RNA-binding structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits