YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRS8A_ARATH
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS8A_ARATH.

Description E-value Query
Range
Subject
Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ...
Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...
366.0 [0..2] [417..300]

Back

Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ  60
   61 RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK VHPEGKYVVD IDKSIDITKI 120
  121 TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP 180
  181 IKHPELFESL GIAQPKGVLL YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS 240
  241 RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN 300
  301 KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI 360
  361 AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV AKVMKKDTEK NMSLRKLWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.154902
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle