YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29138653, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29138653, gi|....

Description	E-value	Query Range	Subject Range
gi\|195957610 - gi\|195957610\|gb\|ACG59719.1\| putative transcriptional regulator [Escherichia coli] gi\|240119365, gi... - gi\|240119365\|dbj\|BAH79228.1\| predicted transcriptional regulator [Escherichia coli O157:H7], gi\|1959... gi\|218355396, gi... - gi\|218547855\|ref\|YP_002381646.1\| conserved hypothetical protein of bacteriophage origin, putative CO... gi\|192955764, gi... - gi\|193070910\|ref\|ZP_03051841.1\| transcriptional regulator, AlpA family [Escherichia coli E110019], g... gi\|124528022, gi... - gi\|124528022\|ref\|ZP_01699375.1\| phage transcriptional regulator, AlpA [Escherichia coli B], gi\|12450... gi\|1589630 - gi\|1589630\|prf\|\|2211375A vis gene gi\|93825 - pir\|\|G42465 hypothetical protein 88 - phage phi-R73 gi\|190909146, gi... - gi\|191170338\|ref\|ZP_03031891.1\| transcriptional regulator, AlpA family [Escherichia coli F11], gi\|19... gi\|81247888, gi\|... - gi\|82546477\|ref\|YP_410424.1\| hypothetical protein SBO_4169 [Shigella boydii Sb227], gi\|81247888\|gb\|A... gi\|170520674, gi... - gi\|170682956\|ref\|YP_001745969.1\| AlpA family transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|170019098, gi... - gi\|170019098\|ref\|YP_001724052.1\| phage transcriptional regulator, AlpA [Escherichia coli ATCC 8739],... gi\|168784922, gi... - gi\|189374800\|gb\|EDU93216.1\| transcriptional regulator, AlpA family [Escherichia coli O157:H7 str. EC... gi\|254038865, gi... - gi\|254038865\|ref\|ZP_04872917.1\| transcriptional regulator [Escherichia sp. 1_1_43], gi\|226838830\|gb\|...	112.0	[0..1]	[72..17]
gi\|188494710, gi... - gi\|75513567\|ref\|ZP_00735958.1\| COG3311: Predicted transcriptional regulator [Escherichia coli 53638]...	112.0	[0..1]	[72..1]
gi\|75242552 - gi\|75242552\|ref\|ZP_00726296.1\| COG3311: Predicted transcriptional regulator [Escherichia coli F11] gi\|75234204 - gi\|75234204\|ref\|ZP_00718597.1\| COG3311: Predicted transcriptional regulator [Escherichia coli E11001...	112.0	[0..1]	[72..1]
Y9K_BPP4 - Uncharacterized protein ORF88 OS=Enterobacteria phage P4 PE=4 SV=1 gi\|76834 - gi\|76834\|pir\|\|JW0029 hypothetical 9.7K protein - satellite phage P4	111.0	[0..1]	[72..17]
gi\|75904 - gi\|75904\|pir\|\|Q1BPP4 hypothetical protein ORF1 - satellite phage P4	107.0	[0..1]	[69..17]
gi\|16763289 - gi\|16763289\|ref\|NP_458906.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serovar ... gi\|213648801 - gi\|213648801\|ref\|ZP_03378854.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serov... gi\|213613126 - gi\|213613126\|ref\|ZP_03370952.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serov... gi\|29144768, gi\|... - gi\|29144768\|ref\|NP_808110.1\| phage DNA binding protein [Salmonella enterica subsp. enterica serovar ... gi\|25301738, gi\|... - gi\|25301738\|pir\|\|AI1062 phage DNA binding protein [imported] - Salmonella enterica subsp. enterica s...	102.0	[0..1]	[71..17]
gi\|94317786 - gi\|94317786\|gb\|ABF15056.1\| putative DNA binding protein [Salmonella enterica subsp. enterica serovar... gi\|194401335, gi... - gi\|194442672\|ref\|YP_002043732.1\| phage transcriptional regulator, AlpA [Salmonella enterica subsp. e...	100.0	[0..8]	[72..22]
gi\|189377856, gi... - gi\|189377856\|gb\|EDU96272.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|195937751 - gi\|195937751\|ref\|ZP_03083133.1\| putative DNA binding protein [Escherichia coli O157:H7 str. EC4024] gi\|208807139, gi... - gi\|208807139\|ref\|ZP_03249476.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|208731738, gi... - gi\|208815090\|ref\|ZP_03256269.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|168769619, gi... - gi\|189361288\|gb\|EDU79707.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168775435, gi... - gi\|187769029\|gb\|EDU32873.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|188999862, gi... - gi\|188999862\|gb\|EDU68848.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|189371696, gi... - gi\|189371696\|gb\|EDU90112.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168749116, gi... - gi\|188016469\|gb\|EDU54591.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189356951, gi... - gi\|189356951\|gb\|EDU75370.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|168761909, gi... - gi\|189367703\|gb\|EDU86119.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|13359756, gi\|... - gi\|15829553\|ref\|NP_308326.1\| putative DNA binding protein [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25301739, gi\|... - pir\|\|G85516 probable DNA binding protein [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|208822863, gi... - gi\|208822863\|ref\|ZP_03263181.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|209160103, gi... - gi\|209398703\|ref\|YP_002268892.1\| phage DNA binding protein [Escherichia coli O157:H7 str. EC4115], g... gi\|12513050, gi\|... - gi\|15799975\|ref\|NP_285987.1\| putative regulatory protein encoded in prophage CP-933I [Escherichia co... gi\|217324493, gi... - gi\|217324493\|ref\|ZP_03440577.1\| phage DNA binding protein [Escherichia coli O157:H7 str. TW14588], g... gi\|13359756, gi\|... - gi\|15829553\|ref\|NP_308326.1\| putative DNA binding protein [Escherichia coli O157:H7], gi\|13359756\|db... gi\|254590830, gi... - gi\|254791430\|ref\|YP_003076267.1\| putative regulatory protein encoded in prophage CP-933I [Escherichi...	98.0	[0..8]	[72..22]
gi\|34101957, gi\|... - gi\|34496103\|ref\|NP_900318.1\| prophage regulatory protein [Chromobacterium violaceum ATCC 12472], gi\|...	91.0	[0..2]	[68..6]
gi\|75824547, gi\|... - gi\|75824547\|ref\|ZP_00753998.1\| COG3311: Predicted transcriptional regulator [Vibrio cholerae RC385],...	89.0	[0..3]	[69..12]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPDITQER FLRLPEVMHL CGLSRSTIYE LIRKGEFPPQ VSLGGKNVAW LHSEITAWMA  60
   61 GRIAGRKRGY DA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	1z4hA
Description:	The response regulator TorI belongs to a new family of atypical excisionase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits