YRC Public Data Repository - Protein Structure Prediction

Protein:	GNGF_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNGF_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|48892462, gi\|... - gi\|71674261\|ref\|ZP_00672008.1\| Conserved hypothetical protein CofD related [Trichodesmium erythraeum...	612.0	[0..1]	[461..1]
gi\|45525116, gi\|... - gi\|67923572\|ref\|ZP_00517045.1\| Conserved hypothetical protein CofD related [Crocosphaera watsonii WH...	585.0	[0..10]	[460..7]
gi\|186685413, gi... - gi\|23127919\|ref\|ZP_00109778.1\| COG0391: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	585.0	[0..10]	[460..7]
gi\|75700066, gi\|... - gi\|75906341\|ref\|YP_320637.1\| hypothetical protein Ava_0116 [Anabaena variabilis ATCC 29413], gi\|7570...	569.0	[0..10]	[461..7]
gi\|22295677, gi\|... - gi\|22299494\|ref\|NP_682741.1\| hypothetical protein tlr1951 [Thermosynechococcus elongatus BP-1], gi\|2...	556.0	[0..1]	[459..1]
gi\|25303417 - pir\|\|AC2093 hypothetical protein alr2298 [imported] - Nostoc sp. (strain PCC 7120) GNGF_NOSS1 - Putative gluconeogenesis factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2298 PE=3 SV=1	552.0	[0..10]	[461..7]
gi\|37523733, gi\|... - gi\|37523733\|ref\|NP_927110.1\| hypothetical protein glr4164 [Gloeobacter violaceus PCC 7421], gi\|35214...	546.0	[0..26]	[459..1]
gi\|33239774, gi\|... - gi\|33239774\|ref\|NP_874716.1\| hypothetical protein Pro0322 [Prochlorococcus marinus subsp. marinus st...	532.0	[0..34]	[459..4]
gi\|33632269, gi\|... - gi\|33864746\|ref\|NP_896305.1\| hypothetical protein SYNW0210 [Synechococcus sp. WH 8102], gi\|33632269\|...	532.0	[0..34]	[462..3]
gi\|84513385, gi\|... - gi\|84518636\|ref\|ZP_01005985.1\| hypothetical protein P9211_07267 [Prochlorococcus marinus str. MIT 92...	527.0	[0..33]	[460..65]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSRFKSAK SAMRKLKTEQ RKFGDRVSQH TSPRVNRWFK WMAPGLFVKR WMVISAVGLT  60
   61 LMFLGLAIWV KLTPIFRITE FVSDTLGFLT NLLPNYVSGP LILALGLFFV FWGQSRTVGS 120
  121 ISEVLQPDND QELVDVLLAH RRLNK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKIVVVGGG TGLSTLLRGL KHYSANITAI VTVADDGGSS GRLRREMGML PPGDIRNCIG  60
   61 ALADEEKLLT ELFQYRFKAG DGLSGHSFGN LFLTAMAEIT GDLEMAAIAC SKVLAVRGKV 120
  121 LPATLDDVKL WAEMEDGRYV EGESNIPEAQ GRIRRIGCLP ESPKALPAVL KAIKAADYII 180
  181 IGPGSLYTSI LPNLLIPEIQ TAIAKAKVPR IYICNVMTQP GETDNYTVSD HLTAIDQVSS 240
  241 ARLYDAVLVQ RNPPSAPVLK KYAAENSHPV YLDRQAVIEK GCRIVLANVM QEDEKSHQVR 300
  301 HDPQRLARVL MRWYGGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	2hzbA
Description:	No description for 2hzbA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits