YRC Public Data Repository - Protein Structure Prediction

Protein:	Y074_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	480 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y074_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|46118460, gi\|... - gi\|67924846\|ref\|ZP_00518242.1\| FeS assembly protein SufB [Crocosphaera watsonii WH 8501], gi\|6785330...	730.0	[0..1]	[480..1]
gi\|75906649, gi\|... - gi\|75906649\|ref\|YP_320945.1\| cysteine desulfurase activator complex subunit SufB [Anabaena variabili...	723.0	[0..3]	[480..2]
gi\|22298033, gi\|... - gi\|22298033\|ref\|NP_681280.1\| cysteine desulfurase activator complex subunit SufB [Thermosynechococcu...	723.0	[0..3]	[480..2]
gi\|17229984, gi\|... - gi\|17229984\|ref\|NP_486532.1\| cysteine desulfurase activator complex subunit SufB [Nostoc sp. PCC 712... gi\|25317725 - pir\|\|AE2117 hypothetical protein alr2492 [imported] - Nostoc sp. (strain PCC 7120)	722.0	[0..3]	[480..2]
gi\|186467368, gi... - gi\|23129619\|ref\|ZP_00111445.1\| COG0719: ABC-type transport system involved in Fe-S cluster assembly,...	717.0	[0..3]	[480..2]
gi\|169886089, gi... - gi\|34765743\|gb\|AAQ82447.1\| SufB [Synechococcus sp. PCC 7002], gi\|170078420\|ref\|YP_001735058.1\| FeS a...	716.0	[0..3]	[480..2]
gi\|86608874, gi\|... - gi\|86608874\|ref\|YP_477636.1\| cysteine desulfurase activator complex subunit SufB [Synechococcus sp. ... gi\|86608874, gi\|... - gi\|86608874\|ref\|YP_477636.1\| FeS assembly protein SufB [Cyanobacteria bacterium Yellowstone B-Prime]...	716.0	[0..3]	[480..2]
gi\|45513213, gi\|... - gi\|81300544\|ref\|YP_400752.1\| cysteine desulfurase activator complex subunit SufB [Synechococcus elon... gi\|56687324, gi\|... - gi\|56752365\|ref\|YP_173066.1\| cysteine desulfurase activator complex subunit SufB [Synechococcus elon...	716.0	[0..3]	[480..2]
gi\|86555372, gi\|... - gi\|86606830\|ref\|YP_475593.1\| FeS assembly protein SufB [Cyanobacteria bacterium Yellowstone A-Prime]... gi\|86555372, gi\|... - gi\|86606830\|ref\|YP_475593.1\| cysteine desulfurase activator complex subunit SufB [Synechococcus sp. ...	710.0	[0..3]	[480..2]
gi\|116626727, gi... - gi\|67934184\|ref\|ZP_00527267.1\| FeS assembly protein SufB [Solibacter usitatus Ellin6076], gi\|6785858...	709.0	[0..2]	[480..4]

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Predicted Domain #1

Region A:
Residues: [1-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTTVKNLV NQPYKYGFVT NIEADAIPRG LSEDVVRLIS AKKNEPEFML DFRLRAYRHW  60
   61 LTMAEPTWPA VHYPPIDYQD IIYYSAPKQS KKKLESLDEV DPALLETFEK LGIPLSEQKR 120
  121 LSNVAVDAIF DSVSIGTTFK EKLAEDGVIF CSISEALQEH PDLVQKYLGS VVPTADNFFA 180
  181 ALNSAVFSDG SFVFIPKGVK CPMELSTYFR INNGDTGQFE RTLIIAEEGA SVSYLEGCTA 240
  241 PMYDTNQLHA AVVELVALDN ADIKYSTVQN WYAGDENGKG GIYNFVTKRG LCKGVNSKIS 300
  301 WTQVETGSAI TWKYPSCVLV GDNSVGEFYS IALTNNKQQA DTGTKMIHIG KNTRSIIISK 360
  361 GISAGNSANS YRGLVKMGPK AQGARNYSQC DSMLIGDRAA ANTFPYIQVD NNTAKVEHEA 420
  421 STSKIGEDQL FYFAQRGISE EDAVSMLVSG FCKDVLNELP MEFAAEADKL LSLKLEGTVG 480
  481

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.522879
Match:	1vh4A
Description:	Crystal structure of a stabilizer of iron transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.334765053110546	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: