| Protein: | gi|24376247, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 988 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376247, gi|....
| Description | E-value | Query Range |
Subject Range |
|
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1353.0 | [0..1] | [988..1] |
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1348.0 | [0..1] | [988..1] |
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1346.0 | [0..1] | [988..1] |
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1345.0 | [0..1] | [988..1] |
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1345.0 | [0..1] | [988..1] |
|
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1344.0 | [0..1] | [988..1] |
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1343.0 | [0..1] | [988..1] |
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1343.0 | [0..1] | [988..1] |
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1342.0 | [0..1] | [988..1] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MPRRSILSAA ERDSLLVLPD TQDELIRHYT FSEPDLSLIR QRRGDANRLG IAVQLCLLRF 60
61 PGQGLLPDAT VPMPLLQWIG QQLQLDPVCW PQYAEREETR REHLLELRVY LGMEPFSQVH 120
121 HRQAVHTTTE LALQTDKGIV LANSVVETLR H
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [152-267] |
1 11 21 31 41 51
| | | | | |
1 KHIILPTLDV VERVCAEALT RANRRIYDTL TEPLSGSHRH RLDDLLKLRD NNKTTTLAWL 60
61 RLSPVKPNSR HMLEHIERLK VWQALDLPIG VDRLIHQNRL LKIAREGGQM TPADLA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.740 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.611 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.566 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.523 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.495 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.489 | N/A | N/A | a.280.1 | Description not found. |
| View | Download | 0.419 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.414 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.368 | N/A | N/A | a.118.8 | TPR-like |
|
Region A: Residues: [268-355] |
1 11 21 31 41 51
| | | | | |
1 KFEPQRRYAT LVALAIEGMA TVTDEIIDLH DRIMGKLFND AKKRHQKQFQ ASGKAINAKV 60
61 RLFGRIGQVL IDAKQAGDDP FAAIEGVI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.975 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.970 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.969 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.958 | a.2.7 | tRNA-binding arm |
| View | Download | 0.935 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.932 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.927 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.911 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.906 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.894 | a.25.3 | Description not found. |
| View | Download | 0.502 | a.4.1 | Homeodomain-like |
| View | Download | 0.493 | a.59.1 | PAH2 domain |
| View | Download | 0.443 | a.231.1 | Description not found. |
| View | Download | 0.397 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.354 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
|
Region A: Residues: [356-452] |
1 11 21 31 41 51
| | | | | |
1 SWEAFAKSVT EAQSLAQPEE FDFLYRLGES YATLRRYAPT FLTALKLRAA PAAKGVLEAI 60
61 EVLRSMNNDN ARKVPADAPI DFIKPRWQKL VITDTGI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.742 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.671 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.627 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.623 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.619 | N/A | N/A | a.24.28 | Description not found. |
| View | Download | 0.609 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.586 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.570 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.542 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.512 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.291 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.272 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.229 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.222 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
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Region A: Residues: [453-540] |
1 11 21 31 41 51
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1 DRRYYELCAL SEMRNALRSG DIWVQGSRQF KDFEDYLVPP AKFVSLKQTN QLPLAVATDC 60
61 EQYLNERLTQ LETQLATVNS MAQANELP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.787 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.699 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.617 | N/A | N/A | a.252.1 | Description not found. |
| View | Download | 0.497 | N/A | N/A | a.30.6 | Description not found. |
| View | Download | 0.490 | N/A | N/A | a.24.19 | Description not found. |
| View | Download | 0.483 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.397 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.333 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.326 | N/A | N/A | a.159.3 | Description not found. |
| View | Download | 0.321 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.308 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.267 | N/A | N/A | a.231.1 | Description not found. |
| View | Download | 0.259 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.246 | N/A | N/A | a.4.1 | Homeodomain-like |
|
Region A: Residues: [541-665] |
1 11 21 31 41 51
| | | | | |
1 DAIITASGLK ITPLDAVVPD TAQRLIDQAA RILPHVKITE LLLEVDEWTG FTRHFAHLKS 60
61 GVLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHIRDET YGAALSELVN 120
121 AQYRH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.389 | N/A | N/A | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.359 | N/A | N/A | d.134.1 | Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 |
| View | Download | 0.352 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.332 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.318 | N/A | N/A | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.315 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.312 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.312 | N/A | N/A | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.300 | N/A | N/A | d.41.4 | Ribosomal protein L10e |
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Region A: Residues: [666-791] |
1 11 21 31 41 51
| | | | | |
1 PFAEHWGDGS TSSSDGQNFR TGNKAESTGH INPKYGSSPG RTFYTHISDQ YAPFHTKVVN 60
61 VGVRDSTYVL DGLLYHESDL RIEEHYTDTA GFTDHVFALM HLLGFRFAPR IRDLGETKLY 120
121 IPKRDV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.693 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.692 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.687 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.613 | N/A | N/A | c.54.1 | IIA domain of mannose transporter, IIA-Man |
| View | Download | 0.600 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.594 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.589 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.519 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.488 | N/A | N/A | d.94.2 | Putative transcriptional regulator TM1602, C-terminal domain |
| View | Download | 0.469 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.424 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.362 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
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Region A: Residues: [792-867] |
1 11 21 31 41 51
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1 TYEGLKSMIG GTLNIKLIRT HWDEILRLAT SIKQGTVTAS LMLRKLGSYP RQNGLAVALR 60
61 ELGRIERTLF ILDWLQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.687 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.678 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.663 | a.4.1 | Homeodomain-like |
| View | Download | 0.630 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.582 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.572 | a.4.1 | Homeodomain-like |
| View | Download | 0.544 | c.98.1 | MurE/MurF N-terminal domain |
| View | Download | 0.532 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.504 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.492 | a.77.1 | DEATH domain |
|
Region A: Residues: [868-988] |
1 11 21 31 41 51
| | | | | |
1 SVELRRRVHA GLNKGEARNA LARAVFFNRL GEIRDRSFEQ QRYRASGLNL VTAAIVLWNT 60
61 VYLERVAHGL RAKGHAVDEE LLQYLSPLGW EHINLTGDYL WRSSAKIGSG KFRPLRPLSP 120
121 A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.796 | N/A | N/A | a.24.22 | Description not found. |
| View | Download | 0.709 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.696 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.678 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.671 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.644 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.639 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.628 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.627 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.586 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.380 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.348 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.304 | N/A | N/A | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.263 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.254 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
