YRC Public Data Repository - Protein Structure Prediction

Protein:	CYOE_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYOE_SHEON.

Description	E-value	Query Range	Subject Range
gi\|68202151, gi\|... - gi\|68230245\|ref\|ZP_00569431.1\| Protoheme IX farnesyltransferase [Frankia sp. EAN1pec], gi\|68202151\|g...	200.0	[0..9]	[284..227]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	200.0	[0..12]	[295..971]
gi\|85837310, gi\|... - gi\|86144411\|ref\|ZP_01062743.1\| protoheme IX farnesyltransferase [Vibrio sp. MED222], gi\|85837310\|gb\|...	198.0	[0..5]	[298..30]
gi\|73956024 - gi\|73956024\|ref\|XP_546634.2\| PREDICTED: similar to heme A:farnesyltransferase [Canis familiaris]	198.0	[0..19]	[281..499]
gi\|108883176, gi... - gi\|157119461\|ref\|XP_001653393.1\| protoheme ix farnesyltransferase [Aedes aegypti], gi\|108883176\|gb\|E...	197.0	[0..6]	[294..117]
gi\|84387586, gi\|... - gi\|84387586\|ref\|ZP_00990604.1\| protoheme IX farnesyltransferase [Vibrio splendidus 12B01], gi\|843776...	196.0	[0..5]	[298..30]
gi\|46100862, gi\|... - gi\|71023219\|ref\|XP_761839.1\| hypothetical protein UM05692.1 [Ustilago maydis 521], ref\|XP_403307.1\| ...	196.0	[0..4]	[293..1206]
CYOE2_SHEFN - Protoheme IX farnesyltransferase 2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=cyoE2 PE=3 SV=1	195.0	[0..1]	[299..1]
gi\|124506307, gi... - gi\|23613216\|ref\|NP_703538.1\| cytochrome c oxidase assembly protein (heme A: farnesyltransferase), pu...	195.0	[0..24]	[291..322]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPLSISSQ PSVNVAWRDY FEMTKPKVVA LMLLTVLVGM CLAMPTILPV QPLIAGLLGI  60
   61 AMMAGSAAAL NHLIDRRIDG LMARTYNRPL PKGRISATRA LIFAAALGSL GFVILYVFTN 120
  121 PLTAWLTFAS LIGYALIYTA YLKRATPQNI VIGGLAGAMP PLLGWTAVTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFHGHALLLV IIIFLWTPPH FWALAIHRRA EYAKVDIPML PVTHGVEFTK TCILLYTILL  60
   61 AIACLLPVLV GMSGPLYFVC SSALSCGFIY KAWQLKYQDH EGLAMQVFRF SIYHLMLLFM 120
  121 ALLLDHYLWA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits