YRC Public Data Repository - Protein Structure Prediction

Protein:	PLSB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	809 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLSB_SHEON.

Description	E-value	Query Range	Subject Range
PLSB_SHISS - Glycerol-3-phosphate acyltransferase OS=Shigella sonnei (strain Ss046) GN=plsB PE=3 SV=1	836.0	[0..1]	[804..21]
gi\|30042890, gi\|... - gi\|30064631\|ref\|NP_838802.1\| glycerol-3-phosphate acyltransferase [Shigella flexneri 2a str. 2457T],... PLSB_SHIFL - Glycerol-3-phosphate acyltransferase OS=Shigella flexneri GN=plsB PE=3 SV=1 gi\|56480529, gi\|... - gi\|56480529\|ref\|NP_709879.2\| glycerol-3-phosphate acyltransferase [Shigella flexneri 2a str. 301], g... PLSB_SHIF8 - Glycerol-3-phosphate acyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=plsB PE=3 SV=...	836.0	[0..1]	[804..21]
PLSB_SHIDS - Glycerol-3-phosphate acyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=plsB PE=3 ... gi\|49176453, gi\|... - gi\|49176453\|ref\|NP_418465.3\| glycerol-3-phosphate acyltransferase [Escherichia coli K12], gb\|AAC7701... gi\|26250823, gi\|... - gi\|26250823\|ref\|NP_756863.1\| glycerol-3-phosphate acyltransferase [Escherichia coli CFT073], gi\|2611... gi\|66518 - pir\|\|XUECAG glycerol-3-phosphate O-acyltransferase (EC 2.3.1.15) - Escherichia coli (strain K-12) gi\|194423761, gi... - gi\|194437205\|ref\|ZP_03069303.1\| glycerol-3-phosphate acyltransferase [Escherichia coli 101-1], gi\|19... PLSB_ECOSE - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain SE11) GN=plsB PE=3 SV=1 gi\|193063006, gi... - gi\|193063006\|ref\|ZP_03044098.1\| glycerol-3-phosphate acyltransferase [Escherichia coli E22], gi\|1929... PLSB_ECOUT - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=plsB PE=3 SV=1 gi\|194415074, gi... - gi\|194426738\|ref\|ZP_03059291.1\| glycerol-3-phosphate acyltransferase [Escherichia coli B171], gi\|194... gi\|190902509, gi... - gi\|191167467\|ref\|ZP_03029281.1\| glycerol-3-phosphate acyltransferase [Escherichia coli B7A], gi\|1909... gi\|190907697, gi... - gi\|191171932\|ref\|ZP_03033477.1\| glycerol-3-phosphate acyltransferase [Escherichia coli F11], gi\|1909... gi\|124527681, gi... - gi\|124527681\|ref\|ZP_01699116.1\| Glycerol-3-phosphate O-acyltransferase [Escherichia coli B], gi\|1245... gi\|254037037, gi... - gi\|254037037\|ref\|ZP_04871114.1\| glycerol-3-phosphate acyltransferase [Escherichia sp. 1_1_43], gi\|22... PLSB_ECOK1 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O1:K1 / APEC GN=plsB PE=3 SV=1 gi\|226901510, gi... - gi\|237703598\|ref\|ZP_04534079.1\| glycerol-3-phosphate acyltransferase [Escherichia sp. 3_2_53FAA], gi...	836.0	[0..1]	[804..21]
PLSB_SHIBS - Glycerol-3-phosphate acyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=plsB PE=3 SV=1	834.0	[0..1]	[804..21]
gi\|4426885 - gi\|4426885\|gb\|AAD20588.1\| mutant glycerol-3-phosphate acyltransferase [Escherichia coli]	834.0	[0..1]	[804..1]
gi\|188494860, gi... - gi\|75514802\|ref\|ZP_00737031.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli 536... PLSB_ECOLU - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=plsB... gi\|85676793, gi\|... - gi\|89110762\|ref\|AP_004542.1\| glycerol-3-phosphate O-acyltransferase [Escherichia coli str. K-12 subs... PLSB_ECO7I - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=plsB PE=3 S... gi\|75241071 - gi\|75241071\|ref\|ZP_00724945.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli F11... gi\|75258961 - gi\|75258961\|ref\|ZP_00730329.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli E22... gi\|83587134 - gi\|83587134\|ref\|ZP_00925763.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli 101... PLSB_ECODH - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=plsB PE=3 SV=1 PLSB_ECO24 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=plsB PE... gi\|162138314 - gi\|162138314\|ref\|YP_543550.2\| glycerol-3-phosphate acyltransferase [Escherichia coli UTI89] PLSB_ECO27 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=plsB PE... gi\|194432310, gi... - gi\|194432310\|ref\|ZP_03064598.1\| glycerol-3-phosphate acyltransferase [Shigella dysenteriae 1012], gi... gi\|75229392 - gi\|75229392\|ref\|ZP_00715944.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli B7A... PLSB_ECO45 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=plsB PE=3 SV... gi\|193067917, gi... - gi\|75238579\|ref\|ZP_00722568.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli E11... PLSB_ECO8A - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O8 (strain IAI1) GN=plsB PE=3 SV=1 PLSB_ECOHS - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=plsB PE=3 SV=1 PLSB_ECO55 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=plsB PE=3 SV=1 gi\|75211924 - gi\|75211924\|ref\|ZP_00711979.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli B17... PLSB_ECO81 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O81 (strain ED1a) GN=plsB PE=3 SV=1 gi\|227886953, gi... - gi\|227886953\|ref\|ZP_04004758.1\| glycerol-3-phosphate acyltransferase [Escherichia coli 83972], gi\|22... PLSB_ECOBW - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=plsB PE=3... gi\|253326375, gi... - gi\|254290727\|ref\|YP_003056475.1\| glycerol-3-phosphate acyltransferase [Escherichia coli BL21(DE3)], ... gi\|254163977, gi... - gi\|254163977\|ref\|YP_003047085.1\| glycerol-3-phosphate acyltransferase [Escherichia coli B str. REL60... sp\|B7UPK2\|PLSB_ECO27 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=plsB PE... EG10740 - glycerol-3-phosphate O-acyltransferase / Glycerol-3-phosphate acyltransferase PLSB_ECOLI - Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT) - Escherichia coli PLSB_ECOL6 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O6 GN=plsB PE=3 SV=2 PLSB_ECOLC - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=p... EG10740 - glycerol-3-phosphate O-acyltransferase / Glycerol-3-phosphate acyltransferase gi\|161949979 - gi\|161949979\|ref\|YP_405898.2\| glycerol-3-phosphate acyltransferase [Shigella dysenteriae Sd197] PLSB_ECOL6 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ...	834.0	[0..1]	[804..1]
gi\|187775961, gi... - gi\|187775961\|ref\|ZP_02799387.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|188025073, gi... - gi\|188025073\|ref\|ZP_02997346.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|13364501, gi\|... - gi\|15834278\|ref\|NP_313051.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7], gi\|133... gi\|189405644, gi... - gi\|189405644\|ref\|ZP_03007892.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208735238, gi... - gi\|208813961\|ref\|ZP_03255290.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208819184, gi... - gi\|208819184\|ref\|ZP_03259504.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|209751342, gi... - gi\|25286478\|pir\|\|H91256 glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O... gi\|217320852, gi... - gi\|217324631\|ref\|ZP_03440715.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189010222, gi... - gi\|189010222\|ref\|ZP_02805442.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189357445, gi... - gi\|189402121\|ref\|ZP_02780200.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189364052, gi... - gi\|189402807\|ref\|ZP_02791290.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|13364501, gi\|... - gi\|15834278\|ref\|NP_313051.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. Sak... gi\|189403931, gi... - gi\|189403931\|ref\|ZP_02785895.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ...	833.0	[0..1]	[804..21]
gi\|15804634, gi\|... - gi\|15804634\|ref\|NP_290675.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 EDL933],... gi\|25286479 - gi\|25286479\|pir\|\|D86097 glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O...	832.0	[0..1]	[804..21]
PLSB_ECO5E - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=plsB PE=3... gi\|162139732 - gi\|162139732\|ref\|NP_313051.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. Sa... gi\|189375105, gi... - gi\|189375105\|gb\|EDU93521.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. EC86... gi\|254796043, gi... - gi\|254796043\|ref\|YP_003080880.1\| glycerol-3-phosphate O-acyltransferase [Escherichia coli O157:H7 st... gi\|195935808 - gi\|195935808\|ref\|ZP_03081190.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208806119, gi... - gi\|208806119\|ref\|ZP_03248456.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... PLSB_ECO57 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O157:H7 GN=plsB PE=3 SV=2	832.0	[0..1]	[804..1]
PLSB_SHIB3 - Glycerol-3-phosphate acyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=...	831.0	[0..1]	[804..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQDSLWLK SLRWIQKYLV HTIVVPQDPF ADLNLDASRP LAYVMKTESL SDIAALSEIT  60
   61 AKLGLPSPYE PLVVNGVVAP RVVCLEGRKP LFGDRASNEP FLECFMRLLA VHKEKPELDI 120
  121 QLVPVSLYWG RTPGKEDDTM KAAVLERENP TWLRKCLMIL FLGRHNFVQF SNAVSLRYMA 180
  181 DEHGTDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIAHKLARVA RVHFRRQRKV MTGPVLPNRQ ALFDSLLKSE SLRKAIQEEA ASKKISETQA  60
   61 RETAIEYLDE IAANYSDSLV RIAERFLTWL WNKLYSGINI KGAEQIRQLH HDGHEIVYVP 120
  121 CHRSHMDYLL LSYILYYQGM VPPHIAAGIN LNFWPAGPLF RRGGAFFIRR SFNGNKLYTA 180
  181 VFREYLDQLF AKGYSVEYFS EGGRSRTGRL LAPKTGMIAM TINSVLRGIE RPVTLVPVYL 240
  241 GYDHVMEVAT YHKELSGKKK QKESVWQVFG AIRKLGNFGQ GYVNFGEPIT LQNFLNETAP 300
  301 NWRSEVADDP EQKPTWLTPA VNVLANRVMT RINDAAAASS ITLTSLVLLA SEQNALERCL 360
  361 LERQLDLYLT LLKRVPYTSF TSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [571-660]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEGDGKHLVQ QGLELNKFSI SADPLGEIVS IDDKQAISMT YYRNNIIHLF IIPSLIASCL  60
   61 INNKQISRAQ IFGVVNDFYP LLKAELFMGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [661-809]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLPSYVDQV LDLFIEQGLV EETELLSVAT ERASQMLLLA GSVNETLQRY AIIFNLLAHR  60
   61 PKMERSDLES ESHLLAQRLG ALHGITAPEF YDKKLYNTLS VKLKELGYFS GKEDKSDVER 120
  121 IREQANNLLR ASVRQTIVAS VTAEQSFNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits